Variant report

Variant	rs35835289
Chromosome Location	chr19:52979361-52979362
allele	-/A/AA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:52976362..52977992-chr19:52978445..52980599,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2100868	0.88[AFR][1000 genomes]
rs2562026	1.00[ASN][1000 genomes]
rs2608533	1.00[ASN][1000 genomes]
rs324105	1.00[ASN][1000 genomes]
rs7259176	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066537	chr19:52794424-53044977	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv544060	chr19:52794424-53044977	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2762048	chr19:52895166-52997571	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv580026	chr19:52937100-53059872	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1063648	chr19:52938131-53041119	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1057296	chr19:52950339-53396986	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52956000-52986200	ZNF genes & repeats	Liver	Liver
2	chr19:52957800-52990400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:52963400-52987600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:52967800-52990600	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:52968000-52981400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
6	chr19:52971600-52981600	ZNF genes & repeats	Brain Hippocampus Middle	brain
7	chr19:52971600-52982000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr19:52971800-52986000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr19:52972200-52981800	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr19:52972400-52979800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
11	chr19:52972800-52981600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr19:52973200-52981800	ZNF genes & repeats	Brain Substantia Nigra	brain
13	chr19:52975600-52981600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr19:52975600-52981600	ZNF genes & repeats	Psoas Muscle	Psoas
15	chr19:52976800-52981600	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr19:52977000-52980200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
17	chr19:52977800-52981400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:52978400-52980000	ZNF genes & repeats	Colon Smooth Muscle	Colon
19	chr19:52978400-52983600	Weak transcription	Fetal Heart	heart
20	chr19:52978400-52985800	ZNF genes & repeats	Fetal Brain Female	brain
21	chr19:52978800-52981400	ZNF genes & repeats	Right Ventricle	heart
22	chr19:52979000-52979600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr19:52979000-52981600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
24	chr19:52979000-52981800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood

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