Variant report

Variant	rs35853657
Chromosome Location	chr11:71010448-71010449
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70992890..70998671-chr11:71006581..71012132,9	MCF-7	breast:
2	chr11:71010311..71012072-chr11:71018911..71021313,2	MCF-7	breast:
3	chr11:70995195..70997597-chr11:71010431..71012982,2	MCF-7	breast:
4	chr11:70963067..70966325-chr11:71009169..71011676,3	MCF-7	breast:
5	chr11:70244192..70246271-chr11:71010187..71013175,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246889	Chromatin interaction
ENSG00000162105	Chromatin interaction
ENSG00000085733	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11603698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57565284	0.81[EUR][1000 genomes]
rs59352428	0.81[EUR][1000 genomes]
rs60028995	0.81[EUR][1000 genomes]
rs751211	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70998600-71010600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:70998600-71017400	Weak transcription	Pancreas	Pancrea
3	chr11:71007400-71014200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:71008400-71012600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:71009000-71010600	Enhancers	Placenta	Placenta
6	chr11:71009200-71011000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:71009200-71011200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:71009200-71011200	Enhancers	Esophagus	oesophagus
9	chr11:71009200-71011400	Enhancers	NHLF	lung
10	chr11:71009200-71011600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:71009200-71011600	Enhancers	HMEC	breast
12	chr11:71009200-71011600	Enhancers	HSMM	muscle
13	chr11:71009200-71011800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr11:71009200-71012000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:71009200-71012000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:71009200-71012400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:71009200-71013000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:71009400-71010800	Enhancers	NH-A	brain
19	chr11:71009600-71011200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:71009600-71011200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:71009600-71011400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:71009600-71011600	Enhancers	NHEK	skin
23	chr11:71009600-71011800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:71009800-71011000	Flanking Active TSS	Hela-S3	cervix
25	chr11:71010000-71011000	Enhancers	Gastric	stomach
26	chr11:71010000-71011000	Flanking Active TSS	A549	lung
27	chr11:71010000-71012600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:71010200-71010600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
29	chr11:71010200-71011000	Enhancers	Stomach Mucosa	stomach
30	chr11:71010200-71011000	Flanking Active TSS	Osteobl	bone
31	chr11:71010400-71010800	Bivalent Enhancer	Adipose Nuclei	Adipose
32	chr11:71010400-71010800	Bivalent Enhancer	HepG2	liver
33	chr11:71010400-71011800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:71010400-71011800	Enhancers	HSMMtube	muscle
35	chr11:71010400-71012000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:71010400-71012000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr11:71010400-71014000	Enhancers	NHDF-Ad	bronchial

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