Variant report

Variant	rs35879589
Chromosome Location	chr8:58335105-58335106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58334906..58335645-chr8:58403623..58404511,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10086935	0.87[ASN][1000 genomes]
rs10101274	0.87[ASN][1000 genomes]
rs10112629	0.86[ASN][1000 genomes]
rs11990437	0.81[ASN][1000 genomes]
rs1316350	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13251134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922131	0.85[ASN][1000 genomes]
rs16922170	0.81[ASN][1000 genomes]
rs17332173	0.84[ASN][1000 genomes]
rs17819759	0.83[ASN][1000 genomes]
rs34246249	0.81[ASN][1000 genomes]
rs34515816	0.80[ASN][1000 genomes]
rs34781696	0.84[ASN][1000 genomes]
rs34896551	0.81[ASN][1000 genomes]
rs35060274	0.82[ASN][1000 genomes]
rs35714499	0.81[ASN][1000 genomes]
rs36029122	0.81[ASN][1000 genomes]
rs36037881	0.81[ASN][1000 genomes]
rs56280635	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62514797	0.81[ASN][1000 genomes]
rs7011998	0.81[ASN][1000 genomes]
rs7816166	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58333600-58337800	Weak transcription	Fetal Heart	heart
2	chr8:58333800-58335400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:58333800-58335400	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:58334000-58335200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr8:58334000-58335400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr8:58334000-58335600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:58334000-58336000	Weak transcription	HSMM	muscle
8	chr8:58334200-58336800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:58334400-58335400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:58334400-58335600	Weak transcription	Liver	Liver

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