Variant report

Variant	rs35883654
Chromosome Location	chr4:69237019-69237020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:69214098..69215634-chr4:69235366..69237032,2	MCF-7	breast:
2	chr4:69236161..69238300-chr4:69240878..69243749,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162840	Chromatin interaction
ENSG00000083896	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10024896	1.00[EUR][1000 genomes]
rs10027564	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10031034	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11932381	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11940780	1.00[EUR][1000 genomes]
rs11942378	1.00[EUR][1000 genomes]
rs17089253	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2056802	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28633232	1.00[EUR][1000 genomes]
rs28758556	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28866177	1.00[EUR][1000 genomes]
rs7664735	1.00[EUR][1000 genomes]
rs7684922	1.00[EUR][1000 genomes]
rs9998289	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008084	chr4:68797598-69482831	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv537131	chr4:68797598-69482831	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1806586	chr4:68943858-69592846	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv537132	chr4:69149648-69482831	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv2757061	chr4:69178920-69631668	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv437385	chr4:69204755-69383357	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv437386	chr4:69213885-69383357	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1006223	chr4:69217756-69540013	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv870075	chr4:69218674-69608683	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv3407776	chr4:69222857-69376755	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3442208	chr4:69222907-69288205	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv879223	chr4:69223057-69592846	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	esv3397664	chr4:69223455-69592846	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	esv3468149	chr4:69223455-69592846	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	esv3468150	chr4:69223455-69592846	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69231000-69237200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:69232200-69255600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:69234200-69239200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:69234200-69242000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:69234600-69239200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:69234800-69238000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:69234800-69239000	Weak transcription	Fetal Kidney	kidney
8	chr4:69234800-69239200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:69234800-69239200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:69235000-69238400	Weak transcription	HSMM	muscle
11	chr4:69235200-69242000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:69235400-69238000	Weak transcription	Osteobl	bone
13	chr4:69235400-69238200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:69235400-69238400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:69235400-69238800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:69235400-69238800	Weak transcription	Right Atrium	heart
17	chr4:69235400-69238800	Weak transcription	HSMMtube	muscle
18	chr4:69235400-69239000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:69235400-69239000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:69235400-69241800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:69235600-69237200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:69235600-69238000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:69235600-69238200	Weak transcription	NHDF-Ad	bronchial
24	chr4:69235600-69239000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:69235800-69238000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:69235800-69238600	Weak transcription	NH-A	brain
27	chr4:69235800-69243000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:69236000-69238000	Weak transcription	NHEK	skin
29	chr4:69236200-69239200	Weak transcription	Placenta	Placenta
30	chr4:69236400-69238000	Weak transcription	HMEC	breast
31	chr4:69236400-69238600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:69236600-69237600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:69237000-69237200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:69237000-69237400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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