Variant report

Variant	rs35906694
Chromosome Location	chr4:175406704-175406705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11726385	0.90[ASN][1000 genomes]
rs11728322	0.82[ASN][1000 genomes]
rs13106936	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13118007	0.97[ASN][1000 genomes]
rs13126570	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13127058	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13132442	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13132689	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17052159	0.82[ASN][1000 genomes]
rs17052161	0.82[ASN][1000 genomes]
rs17052168	0.92[ASN][1000 genomes]
rs17060521	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17060554	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2195039	0.82[ASN][1000 genomes]
rs2303520	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2332896	0.81[ASN][1000 genomes]
rs2332898	0.92[ASN][1000 genomes]
rs34299544	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34939184	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35223598	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35549890	0.92[ASN][1000 genomes]
rs35780342	0.92[ASN][1000 genomes]
rs4147100	0.92[ASN][1000 genomes]
rs45444797	0.97[ASN][1000 genomes]
rs45556037	0.97[ASN][1000 genomes]
rs5012181	0.81[ASN][1000 genomes]
rs59300323	0.82[ASN][1000 genomes]
rs62337142	0.82[ASN][1000 genomes]
rs62337145	0.84[ASN][1000 genomes]
rs62337147	0.92[ASN][1000 genomes]
rs62337155	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62337158	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs62338684	0.95[ASN][1000 genomes]
rs6827776	0.84[ASN][1000 genomes]
rs7665165	0.92[ASN][1000 genomes]
rs7682749	0.92[ASN][1000 genomes]
rs7691789	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9312555	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv881299	chr4:175403673-175415442	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175396000-175442800	Weak transcription	Esophagus	oesophagus
2	chr4:175406000-175406800	Enhancers	Liver	Liver
3	chr4:175406000-175406800	Enhancers	Duodenum Mucosa	Duodenum
4	chr4:175406000-175406800	Enhancers	Fetal Intestine Large	intestine
5	chr4:175406200-175406800	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links