Variant report

Variant	rs35916479
Chromosome Location	chr13:51168967-51168968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12869529	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12871506	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341638	0.89[EUR][1000 genomes]
rs1341639	0.89[EUR][1000 genomes]
rs17074625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2011671	0.89[EUR][1000 genomes]
rs34001256	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34447159	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35241241	0.89[EUR][1000 genomes]
rs71436231	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51151200-51169600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr13:51159400-51170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:51160200-51174000	Enhancers	Primary B cells from peripheral blood	blood
4	chr13:51162200-51172600	Weak transcription	Spleen	Spleen
5	chr13:51162400-51170200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:51164800-51169400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr13:51165600-51169000	Weak transcription	Fetal Heart	heart
8	chr13:51166600-51169600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr13:51166600-51171200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr13:51166600-51171400	Enhancers	Primary hematopoietic stem cells	blood
11	chr13:51166600-51171400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr13:51166800-51169200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr13:51166800-51169600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr13:51166800-51169600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr13:51166800-51169800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr13:51166800-51170200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr13:51167000-51169800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr13:51167400-51169200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:51167600-51169000	Enhancers	Fetal Kidney	kidney
20	chr13:51167600-51169000	Weak transcription	Osteobl	bone
21	chr13:51167600-51169800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr13:51167800-51170800	Weak transcription	HUVEC	blood vessel
23	chr13:51168000-51169000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:51168000-51169200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr13:51168000-51169200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr13:51168000-51169200	Enhancers	Fetal Intestine Large	intestine
27	chr13:51168000-51169200	Enhancers	Small Intestine	intestine
28	chr13:51168000-51169400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr13:51168000-51169800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr13:51168000-51169800	Flanking Active TSS	Dnd41	blood
31	chr13:51168000-51170600	Enhancers	Primary T cells fromperipheralblood	blood
32	chr13:51168000-51173000	Enhancers	Fetal Intestine Small	intestine
33	chr13:51168000-51174000	Enhancers	Fetal Muscle Leg	muscle
34	chr13:51168000-51174400	Enhancers	Fetal Thymus	thymus
35	chr13:51168200-51169200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr13:51168200-51169200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr13:51168200-51169200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr13:51168200-51170000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr13:51168400-51169200	Enhancers	H9 Cell Line	embryonic stem cell
40	chr13:51168400-51169200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr13:51168400-51169200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr13:51168400-51169400	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr13:51168400-51169400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr13:51168400-51169600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr13:51168400-51169800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr13:51168400-51174000	Enhancers	Left Ventricle	heart
47	chr13:51168600-51169000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr13:51168600-51169200	Enhancers	H1 Cell Line	embryonic stem cell
49	chr13:51168600-51169600	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr13:51168600-51170600	Enhancers	Fetal Muscle Trunk	muscle

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