Variant report

Variant	rs35959188
Chromosome Location	chr8:42955355-42955356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:42947352..42950723-chr8:42953484..42957629,6	K562	blood:
2	chr8:42953421..42955932-chr8:42993359..42996024,2	K562	blood:
3	chr8:42954295..42956259-chr8:42994533..42997127,2	MCF-7	breast:
4	chr8:42947644..42951260-chr8:42952281..42957250,8	K562	blood:

Variant related genes	Relation type
ENSG00000185900	Chromatin interaction
ENSG00000165102	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs13248091	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13249741	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13252221	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13256221	0.85[EUR][1000 genomes]
rs13260731	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13269584	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13271956	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13273189	0.85[EUR][1000 genomes]
rs13273989	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13276426	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13276821	0.85[EUR][1000 genomes]
rs13281651	0.84[EUR][1000 genomes]
rs13282019	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16891667	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17622577	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17622732	0.84[EUR][1000 genomes]
rs34044853	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34143633	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34152125	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34210297	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34242561	0.89[EUR][1000 genomes]
rs34320052	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34550994	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34582788	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34668583	0.83[EUR][1000 genomes]
rs34742882	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34920666	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35057982	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35168459	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35316170	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35390123	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35441746	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35491765	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35823486	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35970125	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36026629	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36091568	0.81[EUR][1000 genomes]
rs4524778	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55636430	0.88[AFR][1000 genomes]
rs56384848	0.88[AFR][1000 genomes]
rs56789342	0.88[AFR][1000 genomes]
rs61356971	0.88[AFR][1000 genomes]
rs62515905	0.85[EUR][1000 genomes]
rs62515908	0.87[EUR][1000 genomes]
rs62515909	0.85[EUR][1000 genomes]
rs62515910	0.85[EUR][1000 genomes]
rs62515912	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62515913	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62515916	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62515917	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62515919	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62515948	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62515949	0.84[AMR][1000 genomes]
rs62515952	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62517590	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62517594	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62517595	0.98[EUR][1000 genomes]
rs62517599	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62517604	0.98[EUR][1000 genomes]
rs62517605	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62517606	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62517626	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6999489	0.87[AMR][1000 genomes]
rs71231886	0.89[EUR][1000 genomes]
rs73675452	0.88[AFR][1000 genomes]
rs73675454	0.88[AFR][1000 genomes]
rs73675457	0.88[AFR][1000 genomes]
rs73675458	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890846	chr8:42625663-43240123	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv1024688	chr8:42709414-43333639	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv539563	chr8:42709414-43333639	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv1033927	chr8:42748842-43575771	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv533812	chr8:42755447-43528350	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
6	nsv1032781	chr8:42772394-43461484	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv1021281	chr8:42807619-43472678	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv429912	chr8:42852444-43701143	ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv869499	chr8:42858608-43541986	Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
10	nsv916847	chr8:42858611-43541984	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
11	nsv1027779	chr8:42863024-43729296	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
12	nsv1025336	chr8:42905623-43333638	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
13	nsv539564	chr8:42905623-43333638	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
14	nsv831302	chr8:42909483-43105520	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
15	nsv1029380	chr8:42924737-43729296	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
16	nsv539565	chr8:42924737-43729296	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
17	nsv1021734	chr8:42936943-43824036	Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
18	nsv470208	chr8:42937608-43791691	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
19	nsv1021100	chr8:42938287-43333639	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
20	nsv539566	chr8:42938287-43333639	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
21	nsv1035031	chr8:42940043-43575771	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
22	nsv1031842	chr8:42940043-43729296	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35959188	FNTA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42949400-42957000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:42950400-42957600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:42950800-42958600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:42951000-42960800	ZNF genes & repeats	Brain Germinal Matrix	brain
5	chr8:42951200-42957800	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:42951400-42963200	Strong transcription	K562	blood
7	chr8:42952000-42957600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
8	chr8:42952000-42963200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:42952200-42955400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:42952400-42958000	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr8:42952600-42955400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:42952600-42955400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr8:42952600-42955600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:42952600-42955600	Genic enhancers	Hela-S3	cervix
15	chr8:42952600-42956000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:42952600-42956200	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr8:42952600-42956400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
18	chr8:42952600-42960400	Strong transcription	NHLF	lung
19	chr8:42952600-42962000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:42952600-42963000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:42952600-42964800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:42952600-42966400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:42952600-42967200	ZNF genes & repeats	Fetal Brain Female	brain
24	chr8:42952800-42956200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
25	chr8:42952800-42956200	Genic enhancers	Pancreas	Pancrea
26	chr8:42953000-42957400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr8:42953400-42957800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr8:42953600-42958000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
29	chr8:42953600-42961800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:42953800-42955800	Genic enhancers	Brain Inferior Temporal Lobe	brain
31	chr8:42953800-42956000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:42953800-42956000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:42953800-42956000	Genic enhancers	Brain Angular Gyrus	brain
34	chr8:42953800-42956400	Strong transcription	A549	lung
35	chr8:42953800-42957600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr8:42953800-42957600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr8:42953800-42957600	Weak transcription	Aorta	Aorta
38	chr8:42953800-42958400	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:42953800-42958400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr8:42953800-42958800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:42953800-42963800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr8:42954000-42955400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:42954000-42955800	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr8:42954000-42955800	Strong transcription	HSMM	muscle
45	chr8:42954000-42956200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr8:42954000-42956800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr8:42954000-42957000	Weak transcription	NHDF-Ad	bronchial
48	chr8:42954000-42957200	Weak transcription	HSMMtube	muscle
49	chr8:42954000-42957400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr8:42954000-42959000	Strong transcription	Fetal Lung	lung

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