Variant report

Variant	rs35962246
Chromosome Location	chr13:30888324-30888325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30888078..30890627-chr13:31190542..31192551,3	MCF-7	breast:
2	chr13:30878723..30884002-chr13:30884417..30889770,9	K562	blood:
3	chr13:30874478..30877228-chr13:30887238..30890172,2	K562	blood:
4	chr13:30884908..30886563-chr13:30886759..30889976,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132952	Chromatin interaction
ENSG00000189403	Chromatin interaction
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12873373	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs763808	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7991052	0.82[EUR][1000 genomes]
rs9506288	0.91[ASN][1000 genomes]
rs9506290	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9508701	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9508711	0.87[ASN][1000 genomes]
rs9551887	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9634361	0.82[EUR][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30882000-30889000	Weak transcription	Spleen	Spleen
2	chr13:30882200-30889200	Weak transcription	Left Ventricle	heart
3	chr13:30882200-30889600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:30882200-30892200	Weak transcription	Psoas Muscle	Psoas
5	chr13:30882200-30893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:30882200-30896200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr13:30882200-30896200	Weak transcription	Ovary	ovary
8	chr13:30882200-30910800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr13:30882400-30892000	Weak transcription	Fetal Muscle Leg	muscle
10	chr13:30882400-30892200	Weak transcription	Right Atrium	heart
11	chr13:30882400-30894800	Weak transcription	Fetal Intestine Small	intestine
12	chr13:30882400-30905400	Weak transcription	Right Ventricle	heart
13	chr13:30882400-30905400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr13:30883000-30889000	Weak transcription	Brain Anterior Caudate	brain
15	chr13:30883000-30889400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr13:30883000-30890400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:30884600-30896000	Enhancers	Fetal Heart	heart
18	chr13:30885000-30894600	Weak transcription	Aorta	Aorta
19	chr13:30885800-30889000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr13:30885800-30889800	Enhancers	Primary B cells from peripheral blood	blood
21	chr13:30885800-30889800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr13:30886000-30888400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr13:30886000-30898400	Weak transcription	Lung	lung
24	chr13:30886200-30889200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:30886200-30892000	Weak transcription	Dnd41	blood
26	chr13:30886400-30888800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:30886400-30889200	Enhancers	NHLF	lung
28	chr13:30886800-30896800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:30886800-30900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr13:30887000-30888400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr13:30887000-30888600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:30887000-30889400	Enhancers	Primary B cells from cord blood	blood
33	chr13:30887000-30889600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr13:30887200-30889800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr13:30887400-30888800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr13:30887400-30889200	Enhancers	Primary T cells from cord blood	blood
37	chr13:30887400-30889600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr13:30887400-30889600	Enhancers	GM12878-XiMat	blood
39	chr13:30887600-30889200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr13:30887600-30889800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr13:30887600-30890400	Weak transcription	Liver	Liver
42	chr13:30887600-30890400	Weak transcription	Brain Substantia Nigra	brain
43	chr13:30887600-30892600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr13:30887600-30893200	Weak transcription	NHDF-Ad	bronchial
45	chr13:30887600-30893400	Weak transcription	Brain Angular Gyrus	brain
46	chr13:30887800-30888800	Weak transcription	Fetal Lung	lung
47	chr13:30887800-30889000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr13:30887800-30891400	Weak transcription	Fetal Stomach	stomach
49	chr13:30887800-30892000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr13:30887800-30892000	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links