Variant report

Variant	rs35963994
Chromosome Location	chr6:150575536-150575537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150574454..150576018-chr6:150610517..150613502,2	K562	blood:
2	chr6:150571087..150575708-chr6:150576058..150580847,8	MCF-7	breast:
3	chr6:150571832..150575013-chr6:150575106..150579101,3	K562	blood:
4	chr6:150572452..150574254-chr6:150575448..150578031,3	K562	blood:
5	chr6:150572423..150575831-chr6:150576136..150578517,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11752137	1.00[ASN][1000 genomes]
rs11752147	1.00[ASN][1000 genomes]
rs11752703	1.00[ASN][1000 genomes]
rs11752932	1.00[ASN][1000 genomes]
rs11753008	1.00[ASN][1000 genomes]
rs11757696	1.00[ASN][1000 genomes]
rs13193924	1.00[ASN][1000 genomes]
rs13198606	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206701	1.00[ASN][1000 genomes]
rs13207323	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215621	1.00[ASN][1000 genomes]
rs34123628	0.96[EUR][1000 genomes]
rs34735685	1.00[ASN][1000 genomes]
rs34901813	1.00[ASN][1000 genomes]
rs35111820	1.00[ASN][1000 genomes]
rs35445969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35548444	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001360	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36096822	1.00[ASN][1000 genomes]
rs62440052	1.00[ASN][1000 genomes]
rs71570211	1.00[ASN][1000 genomes]
rs71570212	1.00[ASN][1000 genomes]
rs71570213	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007973	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150569600-150576800	Weak transcription	Esophagus	oesophagus
2	chr6:150569800-150576400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:150569800-150577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:150570400-150576000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:150570400-150577600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:150571000-150576800	Enhancers	HMEC	breast
7	chr6:150571000-150579200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:150571400-150579400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150571600-150576800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:150571600-150577200	Enhancers	Fetal Heart	heart
11	chr6:150572000-150575600	Enhancers	Psoas Muscle	Psoas
12	chr6:150572000-150576600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:150572400-150576800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:150572600-150576000	Weak transcription	Placenta	Placenta
15	chr6:150572600-150577000	Weak transcription	Lung	lung
16	chr6:150572800-150576200	Enhancers	NHEK	skin
17	chr6:150573600-150577000	Weak transcription	Gastric	stomach
18	chr6:150574000-150576000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:150574000-150576400	Weak transcription	Right Ventricle	heart
20	chr6:150574000-150576600	Enhancers	Osteobl	bone
21	chr6:150574200-150575800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:150574200-150577000	Weak transcription	Hela-S3	cervix
23	chr6:150574200-150578800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:150574400-150576800	Enhancers	HSMMtube	muscle
25	chr6:150574400-150577400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:150574600-150575600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:150574600-150576200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:150574600-150576400	Enhancers	K562	blood
29	chr6:150574800-150576800	Weak transcription	Left Ventricle	heart
30	chr6:150574800-150577200	Weak transcription	NH-A	brain
31	chr6:150574800-150590800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:150575000-150576800	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:150575000-150576800	Weak transcription	Right Atrium	heart
34	chr6:150575200-150575600	Weak transcription	Muscle Satellite Cultured Cells	--

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