Variant report

Variant	rs35988039
Chromosome Location	chr4:144174307-144174308
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144174297..144176225-chr4:144302327..144303950,2	K562	blood:

Variant related genes	Relation type
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10461277	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461278	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10461279	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10519679	0.93[EUR][1000 genomes]
rs1108827	0.88[EUR][1000 genomes]
rs11933189	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11935914	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941742	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11945672	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12711407	0.83[ASN][1000 genomes]
rs13105227	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13105258	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13111543	0.93[EUR][1000 genomes]
rs13113118	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13130995	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13131510	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13140326	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13141368	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13141417	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145081	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17017424	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2102494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28452225	0.83[ASN][1000 genomes]
rs28654139	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28797214	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28891127	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300907	0.87[EUR][1000 genomes]
rs300932	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300933	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300937	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs300942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300944	0.88[EUR][1000 genomes]
rs300945	0.88[EUR][1000 genomes]
rs300950	0.88[EUR][1000 genomes]
rs34176541	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34198661	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34225955	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34461753	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34474130	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34589296	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34652171	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34770317	0.83[ASN][1000 genomes]
rs34780033	0.93[EUR][1000 genomes]
rs35021023	0.83[ASN][1000 genomes]
rs35095943	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35143494	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35305979	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35416586	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35549285	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35607189	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35887480	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35909303	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35971728	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4554015	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4690751	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690772	0.83[ASN][1000 genomes]
rs55693016	0.93[EUR][1000 genomes]
rs55846476	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56085707	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56142323	0.92[EUR][1000 genomes]
rs603861	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs603934	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs604746	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6537143	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834491	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6842633	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6853356	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6857448	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs686770	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610408	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71610420	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610422	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610423	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610426	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610427	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610428	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610429	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71610431	0.88[EUR][1000 genomes]
rs71610432	0.88[EUR][1000 genomes]
rs726022	0.93[EUR][1000 genomes]
rs7655033	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7661883	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670050	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670426	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7674403	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7686023	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9637656	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9994551	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997167	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144171800-144174400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:144171800-144174600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:144171800-144174800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:144172000-144174800	Enhancers	HMEC	breast
5	chr4:144172200-144174800	Enhancers	NHEK	skin
6	chr4:144172600-144174600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:144172600-144174800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:144172600-144176200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:144172800-144175600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:144172800-144179800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:144172800-144184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:144173200-144174600	Enhancers	Osteobl	bone
13	chr4:144173600-144175800	Weak transcription	Hela-S3	cervix
14	chr4:144173600-144184000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:144173800-144174800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:144174200-144174600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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