Variant report

Variant	rs36008078
Chromosome Location	chr20:24364792-24364793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11697434	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11698416	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11698961	0.88[ASN][1000 genomes]
rs11700348	0.88[ASN][1000 genomes]
rs34236012	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34578937	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36102524	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6076225	0.83[ASN][1000 genomes]
rs6083509	0.83[ASN][1000 genomes]
rs74173638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74173639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24360600-24365200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr20:24360600-24370000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24362600-24365000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr20:24363200-24364800	Weak transcription	Thymus	Thymus
5	chr20:24363200-24367400	Weak transcription	Fetal Thymus	thymus
6	chr20:24363600-24364800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr20:24363600-24366400	Weak transcription	Fetal Brain Female	brain
8	chr20:24363800-24369800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr20:24364000-24369600	Weak transcription	Brain Substantia Nigra	brain
10	chr20:24364400-24365400	Weak transcription	Fetal Heart	heart
11	chr20:24364600-24364800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr20:24364600-24365200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr20:24364600-24370400	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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