Variant report

Variant	rs36016883
Chromosome Location	chr6:2258344-2258345
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:2249021..2251510-chr6:2257957..2260606,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11961324	0.80[ASN][1000 genomes]
rs11963138	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11963529	0.80[ASN][1000 genomes]
rs12661136	0.80[ASN][1000 genomes]
rs13196306	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13217030	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2295008	0.81[ASN][1000 genomes]
rs2450299	0.83[EUR][1000 genomes]
rs2450304	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2450307	0.83[EUR][1000 genomes]
rs2450310	0.83[EUR][1000 genomes]
rs2479001	0.83[EUR][1000 genomes]
rs2479002	0.83[EUR][1000 genomes]
rs2479004	0.83[EUR][1000 genomes]
rs2505659	0.83[EUR][1000 genomes]
rs2505660	0.83[EUR][1000 genomes]
rs2505661	0.83[EUR][1000 genomes]
rs2505662	0.83[EUR][1000 genomes]
rs2505663	0.83[EUR][1000 genomes]
rs2505666	0.83[EUR][1000 genomes]
rs2505667	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3778568	0.80[ASN][1000 genomes]
rs3800187	0.80[ASN][1000 genomes]
rs3800190	0.80[ASN][1000 genomes]
rs3823287	0.84[ASN][1000 genomes]
rs56196406	0.80[ASN][1000 genomes]
rs72830182	0.82[ASN][1000 genomes]
rs72830184	0.80[ASN][1000 genomes]
rs7754950	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9328087	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9378688	0.84[ASN][1000 genomes]
rs9378692	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9378693	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9391946	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9392374	0.80[ASN][1000 genomes]
rs9392375	0.84[ASN][1000 genomes]
rs9392377	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9405550	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv1025814	chr6:2064629-2308518	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
4	nsv538098	chr6:2064629-2308518	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv1030181	chr6:2071210-2308657	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv538099	chr6:2071210-2308657	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
7	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
8	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
9	nsv830573	chr6:2120985-2263646	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
10	nsv1022623	chr6:2199666-2267750	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
11	nsv538100	chr6:2199666-2267750	ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
12	nsv1022166	chr6:2199666-2320800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
13	nsv1017174	chr6:2213893-2340529	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
14	nsv1033201	chr6:2218647-2308518	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
15	nsv538101	chr6:2218647-2308518	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
16	nsv1026678	chr6:2230064-2261297	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	n/a
17	esv2763526	chr6:2230064-2311916	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
18	nsv1021573	chr6:2246721-2832408	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
19	nsv538102	chr6:2246721-2832408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2246800-2264200	Weak transcription	Gastric	stomach
2	chr6:2247000-2258600	Weak transcription	Colonic Mucosa	Colon
3	chr6:2247000-2260400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:2247000-2264200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:2247000-2264400	Weak transcription	HSMMtube	muscle
6	chr6:2247000-2264800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:2247000-2265200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:2247000-2265200	Weak transcription	Osteobl	bone
9	chr6:2247000-2269400	Weak transcription	Right Ventricle	heart
10	chr6:2247000-2273800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:2247000-2275000	Weak transcription	Fetal Kidney	kidney
12	chr6:2247000-2275400	Weak transcription	NHLF	lung
13	chr6:2247000-2275600	Weak transcription	Fetal Heart	heart
14	chr6:2247200-2264400	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:2247200-2272600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:2247600-2274400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:2247800-2284200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:2248200-2275000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:2248400-2264200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:2248400-2274400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:2248600-2264400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:2250400-2264200	Weak transcription	Pancreas	Pancrea
23	chr6:2250400-2267600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:2250400-2274800	Weak transcription	Brain Angular Gyrus	brain
25	chr6:2250800-2265400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:2251000-2264200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:2251000-2273600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:2251200-2264200	Weak transcription	Thymus	Thymus
29	chr6:2252200-2264800	Weak transcription	Fetal Thymus	thymus
30	chr6:2252400-2265800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:2253800-2259000	Strong transcription	Primary T cells from cord blood	blood
32	chr6:2255000-2259400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr6:2255000-2264200	Weak transcription	HSMM	muscle
34	chr6:2255200-2264200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:2255200-2264200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr6:2255200-2264200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:2255200-2264200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:2255200-2264200	Weak transcription	Spleen	Spleen
39	chr6:2255200-2272400	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:2255400-2264200	Weak transcription	Brain Anterior Caudate	brain
41	chr6:2255400-2264200	Weak transcription	Esophagus	oesophagus
42	chr6:2255400-2264200	Weak transcription	Ovary	ovary
43	chr6:2255400-2264400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:2255400-2265000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:2255400-2272800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:2255600-2258400	Weak transcription	Adipose Nuclei	Adipose
47	chr6:2255600-2264200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:2255600-2264400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr6:2255600-2269600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:2255800-2264200	Weak transcription	Dnd41	blood

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