Variant report

Variant	rs36037391
Chromosome Location	chr14:69819310-69819311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11158804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12232173	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12589991	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12879303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12879627	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12880219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12883441	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12884978	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12893687	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12896978	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1455053	0.93[ASN][1000 genomes]
rs17106973	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2296726	0.96[ASN][1000 genomes]
rs34218656	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34230540	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34433939	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34516562	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34621266	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34625331	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34859711	0.80[EUR][1000 genomes]
rs34864264	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34953569	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35515794	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35532206	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35657710	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35695471	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35724400	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35828634	1.00[AMR][1000 genomes]
rs36027932	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3784141	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs45443301	0.94[ASN][1000 genomes]
rs61980352	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61980353	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61980354	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61982360	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61982397	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61982398	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61982401	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61982420	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61982422	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61982424	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67081339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71423357	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7144886	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7145781	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72625682	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456334	chr14:69793624-69831037	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564966	chr14:69793624-69831037	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69793400-69821200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:69793400-69822600	Weak transcription	Brain Angular Gyrus	brain
3	chr14:69800800-69821800	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:69803400-69820800	Weak transcription	Esophagus	oesophagus
5	chr14:69807000-69821000	Weak transcription	Fetal Intestine Large	intestine
6	chr14:69808600-69821600	Weak transcription	Brain Anterior Caudate	brain
7	chr14:69809800-69822800	Weak transcription	Right Atrium	heart
8	chr14:69810200-69821600	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:69810200-69822000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:69812200-69821600	Weak transcription	Aorta	Aorta
11	chr14:69813400-69821000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:69813800-69819600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:69815400-69819400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:69815400-69821200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:69815600-69821200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:69815600-69838800	Weak transcription	Brain Germinal Matrix	brain
17	chr14:69816400-69821800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:69816400-69822200	Weak transcription	Right Ventricle	heart
19	chr14:69817200-69821800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:69817400-69819400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:69817600-69822600	Weak transcription	Fetal Stomach	stomach
22	chr14:69817600-69823000	Enhancers	Primary B cells from peripheral blood	blood
23	chr14:69817800-69821000	Enhancers	GM12878-XiMat	blood
24	chr14:69818200-69820600	Weak transcription	Fetal Thymus	thymus
25	chr14:69818200-69820800	Strong transcription	Fetal Intestine Small	intestine
26	chr14:69818200-69821800	Weak transcription	Adipose Nuclei	Adipose
27	chr14:69818400-69819400	Genic enhancers	Fetal Muscle Leg	muscle
28	chr14:69818400-69821200	Genic enhancers	Fetal Muscle Trunk	muscle
29	chr14:69818400-69822200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:69818400-69827400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:69818600-69842800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:69818800-69819400	Strong transcription	Spleen	Spleen
33	chr14:69818800-69821000	Strong transcription	Fetal Brain Female	brain
34	chr14:69819000-69821000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:69819000-69822400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:69819200-69820400	Weak transcription	Primary B cells from cord blood	blood
37	chr14:69819200-69822400	Weak transcription	Left Ventricle	heart

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