Variant report

Variant	rs36053338
Chromosome Location	chr6:75163014-75163015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13193570	0.86[ASN][1000 genomes]
rs13196531	0.83[ASN][1000 genomes]
rs13196893	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13198156	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13212917	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13216349	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16884759	0.86[ASN][1000 genomes]
rs34952449	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34984274	0.83[ASN][1000 genomes]
rs35307888	0.83[ASN][1000 genomes]
rs35756548	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41360849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67813921	0.91[AFR][1000 genomes]
rs71555246	0.86[ASN][1000 genomes]
rs71555257	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744201	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7768066	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886167	chr6:75102625-75175449	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv886168	chr6:75112715-75166715	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75162400-75163600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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