Variant report

Variant	rs36057553
Chromosome Location	chr1:179546627-179546628
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:179546592-179546791	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179546057..179548837-chr1:179552198..179554818,2	MCF-7	breast:

Variant related genes	Relation type
NPHS2	TF binding region

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10753200	0.83[EUR][1000 genomes]
rs10913755	0.81[ASN][1000 genomes]
rs10913760	0.81[ASN][1000 genomes]
rs10913761	0.81[ASN][1000 genomes]
rs10913762	0.81[ASN][1000 genomes]
rs10913766	0.81[ASN][1000 genomes]
rs10913767	0.81[ASN][1000 genomes]
rs10913768	0.81[ASN][1000 genomes]
rs10913769	0.81[ASN][1000 genomes]
rs10913770	0.81[ASN][1000 genomes]
rs10913771	0.81[ASN][1000 genomes]
rs10913809	0.93[ASN][1000 genomes]
rs11577579	0.81[ASN][1000 genomes]
rs11578241	0.81[ASN][1000 genomes]
rs11582158	0.93[ASN][1000 genomes]
rs11582255	0.81[ASN][1000 genomes]
rs11582293	0.81[ASN][1000 genomes]
rs11582754	0.81[ASN][1000 genomes]
rs11802624	0.81[ASN][1000 genomes]
rs11802625	0.81[ASN][1000 genomes]
rs11802637	0.81[ASN][1000 genomes]
rs12401957	0.81[ASN][1000 genomes]
rs12403885	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12406197	0.99[EUR][1000 genomes]
rs12722736	0.81[ASN][1000 genomes]
rs12724496	0.81[ASN][1000 genomes]
rs12724634	0.81[ASN][1000 genomes]
rs12724901	0.93[ASN][1000 genomes]
rs12729067	0.81[ASN][1000 genomes]
rs12729775	0.81[ASN][1000 genomes]
rs12736279	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12736545	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12738929	0.81[ASN][1000 genomes]
rs12739116	0.81[ASN][1000 genomes]
rs12744251	0.81[ASN][1000 genomes]
rs12747675	0.81[ASN][1000 genomes]
rs12750591	0.81[ASN][1000 genomes]
rs1328597	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1328598	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1410589	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1576224	0.87[ASN][1000 genomes]
rs1590783	0.83[EUR][1000 genomes]
rs1887815	0.93[EUR][1000 genomes]
rs2209919	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34291276	0.93[ASN][1000 genomes]
rs34463289	0.93[ASN][1000 genomes]
rs35401719	0.93[ASN][1000 genomes]
rs35427395	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35448215	0.81[ASN][1000 genomes]
rs3754133	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3765548	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3930537	0.89[EUR][1000 genomes]
rs4130266	0.81[ASN][1000 genomes]
rs4454499	0.81[ASN][1000 genomes]
rs4651028	0.81[ASN][1000 genomes]
rs4651037	0.87[ASN][1000 genomes]
rs4652418	0.83[EUR][1000 genomes]
rs4652424	0.82[EUR][1000 genomes]
rs4652426	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61821011	0.81[ASN][1000 genomes]
rs61826364	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61826365	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61826402	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7532155	0.81[ASN][1000 genomes]
rs9699789	0.93[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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