Variant report

Variant	rs36057974
Chromosome Location	chr15:76455903-76455904
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76436435..76439411-chr15:76454805..76456724,2	K562	blood:
2	chr15:76455415..76457030-chr15:76460537..76462743,2	K562	blood:
3	chr15:76452254..76455049-chr15:76455599..76457140,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11856680	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12441886	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12442282	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12442982	0.83[ASN][1000 genomes]
rs12591629	0.82[ASN][1000 genomes]
rs12592638	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12902022	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17430570	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34154477	0.89[ASN][1000 genomes]
rs34482917	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35798669	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886773	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4886774	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56853800	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56998110	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58555930	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs66563276	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72736828	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73446449	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs868576	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1039595	chr15:76431374-76483342	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv1045860	chr15:76431374-76485536	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv1053643	chr15:76431374-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	nsv1052496	chr15:76432823-76484981	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1036319	chr15:76432823-76489955	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv1035806	chr15:76435640-76483342	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv1047539	chr15:76435640-76485966	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1042750	chr15:76435640-76490547	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv1054289	chr15:76437970-76485966	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
13	nsv1035389	chr15:76444695-76483342	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv1041435	chr15:76444695-76484981	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
15	nsv1046448	chr15:76444695-76485966	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	nsv1046099	chr15:76444695-76490547	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv1054300	chr15:76445689-76483342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv1044603	chr15:76445689-76484981	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
19	nsv1043026	chr15:76445689-76485966	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
20	nsv1040683	chr15:76454194-76483342	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	nsv1041619	chr15:76454194-76484981	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
22	nsv1046485	chr15:76454194-76485536	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
23	nsv1053572	chr15:76454194-76485966	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
24	nsv1049916	chr15:76454194-76490547	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76443200-76483000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:76443400-76466000	Weak transcription	Brain Angular Gyrus	brain
3	chr15:76448800-76456000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:76452600-76456000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:76452800-76456600	Enhancers	Pancreas	Pancrea
6	chr15:76452800-76458800	Enhancers	Placenta	Placenta
7	chr15:76452800-76459200	Enhancers	Fetal Muscle Leg	muscle
8	chr15:76453000-76456000	Enhancers	Esophagus	oesophagus
9	chr15:76453000-76456200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr15:76453000-76457600	Enhancers	Adipose Nuclei	Adipose
11	chr15:76453000-76459000	Enhancers	Ovary	ovary
12	chr15:76453200-76456400	Enhancers	HSMM	muscle
13	chr15:76453200-76456800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:76453200-76457400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:76453200-76457600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:76453400-76457600	Enhancers	Fetal Lung	lung
17	chr15:76453400-76457600	Enhancers	Spleen	Spleen
18	chr15:76453400-76459000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:76453400-76461000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr15:76453600-76456400	Enhancers	Fetal Brain Male	brain
21	chr15:76453800-76456200	Enhancers	Fetal Intestine Small	intestine
22	chr15:76453800-76456200	Enhancers	Stomach Smooth Muscle	stomach
23	chr15:76453800-76456600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:76453800-76456800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:76453800-76457600	Enhancers	Psoas Muscle	Psoas
26	chr15:76454000-76456400	Enhancers	Colonic Mucosa	Colon
27	chr15:76454000-76456600	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr15:76454000-76457000	Enhancers	Fetal Stomach	stomach
29	chr15:76454400-76456400	Enhancers	HSMMtube	muscle
30	chr15:76454600-76456000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr15:76454600-76461000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:76454800-76456600	Enhancers	NHLF	lung
33	chr15:76455000-76456600	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr15:76455000-76457200	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr15:76455000-76457800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr15:76455200-76456000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:76455200-76456200	Enhancers	HMEC	breast
38	chr15:76455200-76456400	Enhancers	Fetal Intestine Large	intestine
39	chr15:76455200-76456400	Enhancers	Lung	lung
40	chr15:76455200-76456400	Flanking Active TSS	Hela-S3	cervix
41	chr15:76455200-76456600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:76455400-76456000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:76455400-76456200	Enhancers	Placenta Amnion	Placenta Amnion
44	chr15:76455600-76456000	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:76455600-76456000	Enhancers	Brain Germinal Matrix	brain
46	chr15:76455600-76456200	Enhancers	Duodenum Mucosa	Duodenum
47	chr15:76455600-76456200	Bivalent Enhancer	Stomach Mucosa	stomach
48	chr15:76455600-76456200	Enhancers	A549	lung
49	chr15:76455600-76456400	Flanking Active TSS	HepG2	liver
50	chr15:76455600-76456400	Enhancers	NHDF-Ad	bronchial

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