Variant report

Variant	rs36077496
Chromosome Location	chr2:183731193-183731194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs35142583	1.00[AMR][1000 genomes]
rs56152140	1.00[AMR][1000 genomes]
rs56182353	0.87[AMR][1000 genomes]
rs6707761	1.00[AMR][1000 genomes]
rs6743323	0.87[AMR][1000 genomes]
rs6750392	0.87[AMR][1000 genomes]
rs72886518	1.00[AMR][1000 genomes]
rs72886527	1.00[AMR][1000 genomes]
rs72886538	1.00[AMR][1000 genomes]
rs72886541	1.00[AMR][1000 genomes]
rs72886545	1.00[AMR][1000 genomes]
rs72886547	1.00[AMR][1000 genomes]
rs72886553	1.00[AMR][1000 genomes]
rs72886557	1.00[AMR][1000 genomes]
rs72886568	1.00[AMR][1000 genomes]
rs72886577	1.00[AMR][1000 genomes]
rs72886596	1.00[AMR][1000 genomes]
rs72886600	1.00[AMR][1000 genomes]
rs72888431	1.00[AMR][1000 genomes]
rs72888449	1.00[AMR][1000 genomes]
rs72888452	1.00[AMR][1000 genomes]
rs72888461	1.00[AMR][1000 genomes]
rs72888464	1.00[AMR][1000 genomes]
rs72888472	1.00[AMR][1000 genomes]
rs72888474	1.00[AMR][1000 genomes]
rs72888478	0.87[AMR][1000 genomes]
rs72888481	0.87[AMR][1000 genomes]
rs72888488	0.87[AMR][1000 genomes]
rs72888489	0.87[AMR][1000 genomes]
rs72890307	0.87[AMR][1000 genomes]
rs72890345	0.87[AMR][1000 genomes]
rs72890349	0.87[AMR][1000 genomes]
rs72890352	1.00[AMR][1000 genomes]
rs72890353	1.00[AMR][1000 genomes]
rs72890370	1.00[AMR][1000 genomes]
rs72890384	1.00[AMR][1000 genomes]
rs72890392	1.00[AMR][1000 genomes]
rs72900766	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900772	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900775	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72900780	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73037291	0.81[EUR][1000 genomes]
rs73042116	0.93[EUR][1000 genomes]
rs73042118	0.93[EUR][1000 genomes]
rs73042121	0.93[EUR][1000 genomes]
rs73042128	0.93[EUR][1000 genomes]
rs7566497	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2757842	chr2:183437700-183835084	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759104	chr2:183437700-183835084	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2756954	chr2:183528670-183764930	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv34847	chr2:183537399-183786763	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1006265	chr2:183666013-183777604	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv536071	chr2:183666013-183777604	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv818096	chr2:183701588-183827018	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv875484	chr2:183702964-183747442	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183728200-183732400	Active TSS	Aorta	Aorta
2	chr2:183729200-183731200	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr2:183729200-183732400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:183729600-183732400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:183729800-183732400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr2:183729800-183732400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr2:183730000-183732000	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr2:183730000-183732200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr2:183730000-183732600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:183730000-183732800	Active TSS	Brain Angular Gyrus	brain
11	chr2:183730200-183731200	Flanking Active TSS	Fetal Brain Female	brain
12	chr2:183730400-183731200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr2:183730400-183732000	Active TSS	Brain Anterior Caudate	brain
14	chr2:183730400-183732200	Bivalent/Poised TSS	Fetal Kidney	kidney
15	chr2:183730400-183732400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr2:183730400-183732400	Active TSS	Brain Hippocampus Middle	brain
17	chr2:183730600-183731200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:183730600-183731200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:183730600-183731600	Active TSS	Colon Smooth Muscle	Colon
20	chr2:183730600-183732200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr2:183730600-183732200	Active TSS	NHDF-Ad	bronchial
22	chr2:183730600-183732400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr2:183730600-183732400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr2:183730600-183732400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr2:183730600-183732400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:183730800-183731200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
27	chr2:183730800-183731200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:183730800-183731200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr2:183730800-183731200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr2:183730800-183731200	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr2:183730800-183731200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr2:183730800-183731200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr2:183730800-183731200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
34	chr2:183730800-183731200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
35	chr2:183730800-183731200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr2:183730800-183731200	Flanking Active TSS	Fetal Heart	heart
37	chr2:183730800-183731200	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr2:183730800-183731200	Flanking Active TSS	Ovary	ovary
39	chr2:183730800-183731200	Flanking Active TSS	Right Atrium	heart
40	chr2:183730800-183731200	Flanking Active TSS	Right Ventricle	heart
41	chr2:183730800-183731200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr2:183730800-183731200	Flanking Active TSS	Spleen	Spleen
43	chr2:183730800-183731200	Flanking Active TSS	HSMM	muscle
44	chr2:183730800-183731200	Flanking Active TSS	NH-A	brain
45	chr2:183730800-183731200	Flanking Active TSS	NHLF	lung
46	chr2:183730800-183731400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
47	chr2:183730800-183731400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
48	chr2:183730800-183731400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:183730800-183731400	Flanking Active TSS	Esophagus	oesophagus
50	chr2:183730800-183731400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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