Variant report

Variant	rs36082349
Chromosome Location	chr4:48065980-48065981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1018199	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1046695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722304	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11724102	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724347	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11737047	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108221	1.00[ASN][1000 genomes]
rs1507924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2352587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2352588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505096	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34184567	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55781011	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832282	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844476	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151629	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48061200-48075200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:48061400-48068200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:48061600-48068600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:48061800-48066400	Weak transcription	Primary T cells from cord blood	blood
5	chr4:48061800-48068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:48064400-48067600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr4:48064600-48068800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:48065400-48068600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:48065400-48069600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr4:48065800-48066400	Enhancers	GM12878-XiMat	blood
11	chr4:48065800-48066600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:48065800-48067600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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