Variant report

Variant	rs36087364
Chromosome Location	chr4:81797911-81797912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1027294	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11099448	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12233641	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12233814	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12648780	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12648781	0.84[ASN][1000 genomes]
rs13102852	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13108385	0.82[ASN][1000 genomes]
rs13113167	0.90[EUR][1000 genomes]
rs13116671	0.90[EUR][1000 genomes]
rs13119650	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17005004	0.88[EUR][1000 genomes]
rs34144094	0.88[EUR][1000 genomes]
rs34269465	0.82[ASN][1000 genomes]
rs34620960	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34747140	0.88[EUR][1000 genomes]
rs34834368	0.81[EUR][1000 genomes]
rs34851603	0.90[EUR][1000 genomes]
rs35336312	0.82[ASN][1000 genomes]
rs35443534	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35663002	0.84[ASN][1000 genomes]
rs36002245	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71596035	0.82[ASN][1000 genomes]
rs71596042	0.82[EUR][1000 genomes]
rs7673771	0.90[EUR][1000 genomes]
rs954416	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv517072	chr4:81793825-81890350	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81796200-81798600	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:81797000-81798200	Enhancers	Primary B cells from cord blood	blood
3	chr4:81797400-81799400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:81797400-81799600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:81797400-81799600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:81797600-81798200	Enhancers	Osteobl	bone
7	chr4:81797600-81798600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:81797800-81798600	Flanking Active TSS	GM12878-XiMat	blood
9	chr4:81797800-81798800	Enhancers	NHDF-Ad	bronchial
10	chr4:81797800-81799600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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