Variant report

Variant	rs36099217
Chromosome Location	chr7:138292622-138292623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11769924	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13231090	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13234062	0.82[EUR][1000 genomes]
rs33935215	0.86[EUR][1000 genomes]
rs71541397	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73164647	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138284200-138293000	Weak transcription	Fetal Kidney	kidney
2	chr7:138285000-138292800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:138290200-138293800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:138291000-138294400	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:138291600-138294000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:138291800-138293400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:138292000-138294200	Enhancers	Brain Germinal Matrix	brain
9	chr7:138292200-138293400	Enhancers	Liver	Liver
10	chr7:138292200-138293400	Enhancers	GM12878-XiMat	blood
11	chr7:138292200-138293600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:138292200-138293600	Enhancers	HSMM	muscle
13	chr7:138292200-138293600	Enhancers	HSMMtube	muscle
14	chr7:138292400-138293000	Weak transcription	Primary T cells from cord blood	blood
15	chr7:138292400-138293000	Weak transcription	Fetal Lung	lung
16	chr7:138292400-138293000	Weak transcription	Pancreas	Pancrea
17	chr7:138292400-138293400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:138292600-138294000	Weak transcription	Fetal Intestine Small	intestine
19	chr7:138292600-138295200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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