Variant report

Variant	rs36100854
Chromosome Location	chr6:12977851-12977852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13211739	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385616	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34054869	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34476983	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34541307	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35056688	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67061558	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67193572	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72820839	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72820847	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12964000-12988000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:12968800-12978200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:12971800-12979200	Enhancers	Fetal Heart	heart
4	chr6:12973200-12978200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:12974200-12978200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:12974200-12978200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:12974200-12981400	Weak transcription	HUVEC	blood vessel
8	chr6:12974200-12982200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:12974400-12986800	Weak transcription	Lung	lung
10	chr6:12975000-12980400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:12975400-12978200	Weak transcription	Right Ventricle	heart
12	chr6:12975400-12978800	Weak transcription	Brain Anterior Caudate	brain
13	chr6:12975600-12981000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:12975600-12981200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:12976000-12981200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:12976000-12990200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:12977400-12978200	Weak transcription	Left Ventricle	heart
18	chr6:12977600-12978600	Enhancers	Fetal Brain Male	brain
19	chr6:12977600-12986600	Weak transcription	Aorta	Aorta
20	chr6:12977800-12978000	Enhancers	Fetal Brain Female	brain
21	chr6:12977800-12978000	Weak transcription	Fetal Muscle Leg	muscle

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