Variant report

Variant	rs36104548
Chromosome Location	chr4:86729591-86729592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86728075..86730663-chr4:86957838..86959662,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11733669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2167718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815441	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86718200-86733800	Weak transcription	Gastric	stomach
2	chr4:86719400-86730800	Weak transcription	Primary B cells from cord blood	blood
3	chr4:86722000-86731400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr4:86727000-86730400	Enhancers	NHDF-Ad	bronchial
5	chr4:86727400-86730200	Enhancers	HSMM	muscle
6	chr4:86727400-86730800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr4:86727600-86729800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:86727600-86729800	Enhancers	HUVEC	blood vessel
9	chr4:86727800-86735800	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:86728000-86731000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr4:86728200-86747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:86728400-86729800	Enhancers	Fetal Kidney	kidney
13	chr4:86728400-86730000	Enhancers	Fetal Heart	heart
14	chr4:86728600-86729600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86728600-86729600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:86728600-86729600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:86728600-86729800	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr4:86728600-86729800	Enhancers	HSMMtube	muscle
19	chr4:86728600-86730000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:86728600-86730200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr4:86728600-86730400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr4:86728600-86730400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr4:86728600-86730800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr4:86728600-86731000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr4:86728800-86729600	Enhancers	H1 Cell Line	embryonic stem cell
26	chr4:86728800-86729600	Enhancers	Brain Germinal Matrix	brain
27	chr4:86728800-86729800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:86728800-86729800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:86728800-86730000	Enhancers	H9 Cell Line	embryonic stem cell
30	chr4:86728800-86730000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:86728800-86730200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:86728800-86731000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr4:86729000-86729600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:86729000-86729600	Weak transcription	Pancreas	Pancrea
35	chr4:86729000-86729600	Weak transcription	Right Atrium	heart
36	chr4:86729000-86734000	Weak transcription	Left Ventricle	heart
37	chr4:86729000-86735600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr4:86729000-86739400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr4:86729000-86744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:86729200-86729600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr4:86729200-86729800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr4:86729200-86730000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr4:86729200-86733800	Weak transcription	NH-A	brain
44	chr4:86729200-86736200	Weak transcription	Fetal Stomach	stomach
45	chr4:86729400-86729600	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr4:86729400-86729800	Enhancers	Adipose Nuclei	Adipose
47	chr4:86729400-86730200	Enhancers	Osteobl	bone
48	chr4:86729400-86747400	Weak transcription	Colon Smooth Muscle	Colon

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