Variant report

Variant	rs36156145
Chromosome Location	chr10:50950360-50950361
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:50950301-50950479	MCF-7	breast:	n/a	n/a
2	NR2C2	chr10:50949682-50950638	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:50949593-50950649	HepG2	liver:	n/a	n/a
4	CTCF	chr10:50949707-50950571	GM19239	blood:	n/a	n/a
5	SUZ12	chr10:50949606-50950651	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr10:50950222-50950501	K562	blood:	n/a	n/a

Variant related genes	Relation type
OGDHL	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv895378	chr10:50801342-50955649	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1048905	chr10:50928727-51019190	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3318018	chr10:50947746-50952444	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3318029	chr10:50947746-50952444	Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv3401087	chr10:50948446-50954144	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3346477	chr10:50949996-50952794	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv3363189	chr10:50950124-50950399	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50940400-50953400	Weak transcription	Brain Hippocampus Middle	brain
2	chr10:50940600-50966000	Strong transcription	Liver	Liver
3	chr10:50941000-50951600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:50941200-50965400	Weak transcription	Brain Germinal Matrix	brain
5	chr10:50943000-50956400	Strong transcription	Brain Anterior Caudate	brain
6	chr10:50943200-50969400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:50943400-50956200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:50943800-50956000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:50944000-50969400	Weak transcription	Brain Substantia Nigra	brain
10	chr10:50944400-50952400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:50944800-50951600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:50945400-50953000	Weak transcription	Ovary	ovary
13	chr10:50946200-50951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:50946200-50955200	Weak transcription	Fetal Brain Female	brain
15	chr10:50947200-50952400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:50947800-50960400	Strong transcription	Brain Angular Gyrus	brain
17	chr10:50948000-50956600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:50948600-50955600	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:50948800-50956600	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr10:50949000-50953800	Weak transcription	Gastric	stomach
21	chr10:50949600-50950400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr10:50949600-50950400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:50949600-50950400	Weak transcription	Fetal Intestine Small	intestine
24	chr10:50949600-50950600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
25	chr10:50949600-50950600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:50949600-50950600	Strong transcription	Fetal Heart	heart
27	chr10:50949600-50950600	ZNF genes & repeats	Fetal Kidney	kidney
28	chr10:50949600-50956200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:50949800-50950800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:50949800-50950800	Genic enhancers	Pancreas	Pancrea
31	chr10:50950000-50951000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:50950000-50954800	Weak transcription	Spleen	Spleen
33	chr10:50950000-50955000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:50950200-50950800	Enhancers	Right Ventricle	heart
35	chr10:50950200-50952600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:50950200-50954600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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