Variant report

Variant	rs36189403
Chromosome Location	chr8:108254216-108254217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs12147674	1.00[AFR][1000 genomes]
rs12878124	1.00[AFR][1000 genomes]
rs12878633	1.00[AFR][1000 genomes]
rs12878710	1.00[AFR][1000 genomes]
rs12878846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12879149	1.00[AFR][1000 genomes]
rs12879319	1.00[AFR][1000 genomes]
rs12882123	1.00[AFR][1000 genomes]
rs12882687	1.00[AFR][1000 genomes]
rs12882773	1.00[AFR][1000 genomes]
rs12885310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12887471	1.00[AFR][1000 genomes]
rs12887758	1.00[AFR][1000 genomes]
rs12888451	1.00[AFR][1000 genomes]
rs12889687	1.00[AFR][1000 genomes]
rs12889859	1.00[AFR][1000 genomes]
rs12890074	1.00[AFR][1000 genomes]
rs12890845	1.00[AFR][1000 genomes]
rs12893402	1.00[AFR][1000 genomes]
rs12894394	1.00[AFR][1000 genomes]
rs12896790	1.00[AFR][1000 genomes]
rs12897309	1.00[AFR][1000 genomes]
rs17179274	1.00[AFR][1000 genomes]
rs17179609	1.00[AFR][1000 genomes]
rs17768440	1.00[AFR][1000 genomes]
rs17768654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs33984772	1.00[AFR][1000 genomes]
rs34025516	1.00[AFR][1000 genomes]
rs34043056	1.00[AFR][1000 genomes]
rs34069628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34184341	1.00[AFR][1000 genomes]
rs34242177	1.00[AFR][1000 genomes]
rs34256053	1.00[AFR][1000 genomes]
rs34265999	1.00[AFR][1000 genomes]
rs34273412	1.00[AFR][1000 genomes]
rs34306117	1.00[AFR][1000 genomes]
rs34338696	1.00[AFR][1000 genomes]
rs34434018	1.00[AFR][1000 genomes]
rs34450997	1.00[AFR][1000 genomes]
rs34469876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34496783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34516219	1.00[AFR][1000 genomes]
rs34543736	1.00[AFR][1000 genomes]
rs34548330	1.00[AFR][1000 genomes]
rs34567961	1.00[AFR][1000 genomes]
rs34586390	1.00[AFR][1000 genomes]
rs34680819	1.00[AFR][1000 genomes]
rs34747911	1.00[AFR][1000 genomes]
rs34813864	1.00[AFR][1000 genomes]
rs34830744	1.00[AFR][1000 genomes]
rs34886614	1.00[AFR][1000 genomes]
rs35030337	1.00[AFR][1000 genomes]
rs35074434	1.00[AFR][1000 genomes]
rs35082276	1.00[AFR][1000 genomes]
rs35110244	1.00[AFR][1000 genomes]
rs35111962	1.00[AFR][1000 genomes]
rs35141852	1.00[AFR][1000 genomes]
rs35169093	1.00[AFR][1000 genomes]
rs35190835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35243823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35294705	1.00[AFR][1000 genomes]
rs35310265	1.00[AFR][1000 genomes]
rs35319231	1.00[AFR][1000 genomes]
rs35330350	1.00[AFR][1000 genomes]
rs35333548	1.00[AFR][1000 genomes]
rs35347282	1.00[AFR][1000 genomes]
rs35350493	1.00[AFR][1000 genomes]
rs35383091	1.00[AFR][1000 genomes]
rs35393462	1.00[AFR][1000 genomes]
rs35413274	1.00[AFR][1000 genomes]
rs35427651	1.00[AFR][1000 genomes]
rs35435404	1.00[AFR][1000 genomes]
rs35438963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35441075	1.00[AFR][1000 genomes]
rs35470726	1.00[AFR][1000 genomes]
rs35505269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35536208	1.00[AFR][1000 genomes]
rs35610918	1.00[AFR][1000 genomes]
rs35699962	1.00[AFR][1000 genomes]
rs35706871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35748911	1.00[AFR][1000 genomes]
rs35791659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35802121	1.00[AFR][1000 genomes]
rs35852338	1.00[AFR][1000 genomes]
rs35891950	1.00[AFR][1000 genomes]
rs35926829	1.00[AFR][1000 genomes]
rs35926928	1.00[AFR][1000 genomes]
rs35942161	1.00[AFR][1000 genomes]
rs36004540	1.00[AFR][1000 genomes]
rs36044547	1.00[AFR][1000 genomes]
rs36074427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36194865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55734217	1.00[AFR][1000 genomes]
rs55972477	1.00[AFR][1000 genomes]
rs56223359	1.00[AFR][1000 genomes]
rs71405800	1.00[AFR][1000 genomes]
rs71407707	1.00[AFR][1000 genomes]
rs71407708	1.00[AFR][1000 genomes]
rs71407709	1.00[AFR][1000 genomes]
rs71407710	1.00[AFR][1000 genomes]
rs71407711	1.00[AFR][1000 genomes]
rs71407712	1.00[AFR][1000 genomes]
rs71407716	1.00[AFR][1000 genomes]
rs71407717	1.00[AFR][1000 genomes]
rs71407718	1.00[AFR][1000 genomes]
rs71407720	1.00[AFR][1000 genomes]
rs71407721	1.00[AFR][1000 genomes]
rs71407722	1.00[AFR][1000 genomes]
rs71407723	1.00[AFR][1000 genomes]
rs71407724	1.00[AFR][1000 genomes]
rs71407725	1.00[AFR][1000 genomes]
rs71407726	1.00[AFR][1000 genomes]
rs71407727	1.00[AFR][1000 genomes]
rs71407728	1.00[AFR][1000 genomes]
rs71407729	1.00[AFR][1000 genomes]
rs71407730	1.00[AFR][1000 genomes]
rs71407731	1.00[AFR][1000 genomes]
rs71407732	1.00[AFR][1000 genomes]
rs71407733	1.00[AFR][1000 genomes]
rs71407734	1.00[AFR][1000 genomes]
rs71407741	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1026763	chr8:108155029-108263914	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv891266	chr8:108234516-108307058	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108227800-108276200	Weak transcription	Aorta	Aorta
2	chr8:108236400-108259000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:108236600-108259600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:108238200-108265200	Weak transcription	Ovary	ovary
5	chr8:108239000-108264600	Weak transcription	Osteobl	bone
6	chr8:108239600-108263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:108239800-108263400	Weak transcription	Fetal Lung	lung
8	chr8:108240200-108259600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:108242400-108263800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:108247800-108260400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:108251000-108274000	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links