Variant report

Variant	rs36234278
Chromosome Location	chr11:17499148-17499149
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11024302	0.92[EUR][1000 genomes]
rs11024306	0.92[EUR][1000 genomes]
rs11024307	0.92[EUR][1000 genomes]
rs12281584	0.92[EUR][1000 genomes]
rs12294674	0.92[EUR][1000 genomes]
rs55735208	0.97[EUR][1000 genomes]
rs56063548	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56070367	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56095800	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56130449	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56170308	0.97[EUR][1000 genomes]
rs56361848	0.81[EUR][1000 genomes]
rs57520450	0.92[EUR][1000 genomes]
rs58150842	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs985571	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897019	chr11:17475443-17499547	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17497400-17499200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr11:17498400-17500400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:17498400-17501000	Weak transcription	Gastric	stomach
4	chr11:17498400-17501000	Weak transcription	Pancreas	Pancrea
5	chr11:17498800-17499400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:17498800-17499600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:17498800-17500600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:17498800-17502000	Enhancers	Dnd41	blood
9	chr11:17499000-17499200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr11:17499000-17499400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:17499000-17500400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:17499000-17500600	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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