Variant report

Variant	rs36234282
Chromosome Location	chr11:17499860-17499861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr11:17499634-17500049	Hela-S3	cervix:	n/a	n/a
2	REST	chr11:17499346-17500175	HL-60	blood:	n/a	chr11:17499598-17499611
3	REST	chr11:17499685-17499919	HepG2	liver:	n/a	n/a
4	REST	chr11:17499710-17499920	PANC-1	pancreas:	n/a	n/a
5	REST	chr11:17499602-17500015	HepG2	liver:	n/a	n/a
6	REST	chr11:17499449-17500046	PFSK-1	brain:	n/a	chr11:17499598-17499611
7	REST	chr11:17499168-17500188	ECC-1	luminal epithelium:	n/a	chr11:17499598-17499611
8	REST	chr11:17499450-17500000	SK-N-SH	brain:	n/a	chr11:17499598-17499611
9	REST	chr11:17499553-17500091	MCF-7	breast:	n/a	chr11:17499598-17499611
10	REST	chr11:17499449-17500086	MCF-7	breast:	n/a	chr11:17499598-17499611
11	REST	chr11:17499635-17500024	HCT-116	colon:	n/a	n/a
12	REST	chr11:17499526-17500029	PANC-1	pancreas:	n/a	chr11:17499598-17499611
13	REST	chr11:17499744-17499901	PFSK-1	brain:	n/a	n/a
14	REST	chr11:17499476-17499998	Hela-S3	cervix:	n/a	chr11:17499598-17499611
15	REST	chr11:17499510-17500048	H1-hESC	embryonic stem cell:	n/a	chr11:17499598-17499611
16	REST	chr11:17499454-17500057	PFSK-1	brain:	n/a	chr11:17499598-17499611
17	MAFK	chr11:17499670-17499870	IMR90	lung:	n/a	n/a
18	REST	chr11:17499523-17500061	PANC-1	pancreas:	n/a	chr11:17499598-17499611
19	REST	chr11:17499355-17500066	PANC-1	pancreas:	n/a	chr11:17499598-17499611
20	REST	chr11:17499668-17499914	PFSK-1	brain:	n/a	n/a
21	REST	chr11:17499605-17499954	GM12878	blood:	n/a	n/a
22	REST	chr11:17499741-17499889	SK-N-SH	brain:	n/a	n/a
23	REST	chr11:17499639-17499907	K562	blood:	n/a	n/a
24	TEAD4	chr11:17499566-17500032	A549	lung:	n/a	n/a
25	REST	chr11:17499351-17500252	ECC-1	luminal epithelium:	n/a	chr11:17499598-17499611
26	REST	chr11:17499636-17500073	A549	lung:	n/a	n/a
27	REST	chr11:17499451-17500118	A549	lung:	n/a	chr11:17499598-17499611
28	REST	chr11:17499503-17500026	HL-60	blood:	n/a	chr11:17499598-17499611
29	REST	chr11:17499644-17499980	SK-N-SH	brain:	n/a	n/a
30	REST	chr11:17499463-17500039	H1-hESC	embryonic stem cell:	n/a	chr11:17499598-17499611
31	REST	chr11:17499646-17500016	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:17494629..17496394-chr11:17499346..17501240,2	MCF-7	breast:
2	chr11:17499490..17502461-chr11:17527268..17529480,2	MCF-7	breast:
3	chr11:17408350..17411098-chr11:17499299..17501931,2	MCF-7	breast:
4	chr11:17408194..17409948-chr11:17498514..17500744,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OTOG-1	chr11:17498779-17503911	NONHSAT018236

Variant related genes	Relation type
ABCC8	TF binding region
ENSG00000187486	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12576130	0.86[ASN][1000 genomes]
rs12577163	0.86[ASN][1000 genomes]
rs36234280	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36234283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757535	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17498400-17500400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:17498400-17501000	Weak transcription	Gastric	stomach
3	chr11:17498400-17501000	Weak transcription	Pancreas	Pancrea
4	chr11:17498800-17500600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:17498800-17502000	Enhancers	Dnd41	blood
6	chr11:17499000-17500400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:17499000-17500600	Weak transcription	Fetal Brain Female	brain
8	chr11:17499600-17500400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:17499600-17500800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:17499800-17500000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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