Variant report

Variant	rs36318
Chromosome Location	chr14:72409352-72409353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12434220	0.91[EUR][1000 genomes]
rs12897929	0.96[CEU][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs2191251	0.96[ASN][1000 genomes]
rs2238284	0.89[GIH][hapmap];0.89[YRI][hapmap]
rs2332687	0.96[ASN][1000 genomes]
rs2877771	0.89[EUR][1000 genomes]
rs34729701	0.90[EUR][1000 genomes]
rs35051666	0.90[EUR][1000 genomes]
rs35858041	0.90[EUR][1000 genomes]
rs36332	0.93[GIH][hapmap];0.81[YRI][hapmap]
rs56067914	0.89[EUR][1000 genomes]
rs6574035	0.96[ASN][1000 genomes]
rs7148606	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36318	ACOT4	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72408400-72409400	Enhancers	GM12878-XiMat	blood
2	chr14:72408600-72409400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72408600-72412600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:72408800-72411000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr14:72409000-72410000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:72409000-72411600	Enhancers	Primary hematopoietic stem cells	blood
7	chr14:72409200-72410200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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