Variant report

Variant	rs363227
Chromosome Location	chr10:119026566-119026567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10082478	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1008448	0.85[JPT][hapmap]
rs10787767	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10787771	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10886058	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10886062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197938	0.83[AMR][1000 genomes]
rs11197968	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.92[YRI][hapmap]
rs11197969	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.92[YRI][hapmap]
rs11197981	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs12244411	0.91[CHD][hapmap];0.92[JPT][hapmap]
rs12250377	0.81[AMR][1000 genomes]
rs12265713	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12413507	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs12414644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12569963	0.86[ASN][1000 genomes]
rs12571779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12573009	0.80[CEU][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap]
rs1860407	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1935167	0.86[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs1954212	0.89[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2052075	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2153714	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2244249	0.89[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2244375	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2255062	0.81[ASN][1000 genomes]
rs2255321	0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255367	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs2283142	0.81[AMR][1000 genomes]
rs2429505	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs2429508	0.85[AMR][1000 genomes]
rs2487692	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2490626	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2490631	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532781	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532782	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532783	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532784	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532785	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532786	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532787	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532788	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532795	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.92[YRI][hapmap]
rs2532796	0.89[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap]
rs2532809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532813	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532815	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532817	0.89[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532834	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532835	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532836	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532838	0.89[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532839	0.89[CEU][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532840	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs2532841	0.85[JPT][hapmap]
rs2532842	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2532844	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap]
rs2794419	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2794421	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2794435	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2794436	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2803799	0.89[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2803801	0.93[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2803802	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2803803	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2803804	0.89[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.80[LWK][hapmap];0.92[YRI][hapmap]
rs2803807	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2803809	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2803810	0.89[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2803816	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2901123	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3523	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363229	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363235	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363236	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363240	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs363242	0.89[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs363243	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs363271	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs363275	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs363276	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363278	1.00[CEU][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363279	0.81[GIH][hapmap]
rs363282	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814230	0.89[CEU][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap]
rs4751623	0.88[CEU][hapmap];0.88[JPT][hapmap]
rs4752048	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752051	0.94[JPT][hapmap]
rs4752056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs6585431	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs7070594	0.89[CEU][hapmap]
rs7072027	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs7086651	0.89[CEU][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap]
rs72825515	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7897828	0.89[CEU][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7898092	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7902237	0.85[JPT][hapmap]
rs887341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs979992	0.89[CEU][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424329	chr10:119026362-119030860	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs363227	PDZD8	Cis_1M	lymphoblastoid	RTeQTL
rs363227	NRAP	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119017400-119034000	Weak transcription	Gastric	stomach
2	chr10:119019800-119031200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:119020000-119034000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:119020000-119042600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:119020600-119028000	Weak transcription	Thymus	Thymus
6	chr10:119020600-119035000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:119020600-119043200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:119020600-119045400	Weak transcription	Fetal Heart	heart
9	chr10:119021400-119043200	Weak transcription	Fetal Intestine Small	intestine
10	chr10:119022600-119042000	Weak transcription	Fetal Intestine Large	intestine
11	chr10:119023000-119031800	Weak transcription	Ovary	ovary
12	chr10:119023800-119043200	Weak transcription	Spleen	Spleen
13	chr10:119025200-119026800	Weak transcription	HepG2	liver
14	chr10:119026000-119027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:119026000-119032600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:119026200-119027000	Weak transcription	Fetal Thymus	thymus
17	chr10:119026200-119031400	Weak transcription	K562	blood
18	chr10:119026400-119029200	Strong transcription	Primary T cells from cord blood	blood

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