Variant report
| Variant | rs36327 |
|---|---|
| Chromosome Location | chr14:72396947-72396948 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SETDB1 | chr14:72396578-72397130 | U2OS | brain: | n/a | n/a |
| 2 | MAFK | chr14:72396923-72397228 | HepG2 | liver: | n/a | chr14:72397080-72397091 chr14:72397075-72397091 chr14:72397080-72397091 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RGS6 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10147777 | 0.99[ASN][1000 genomes] |
| rs11846754 | 0.99[ASN][1000 genomes] |
| rs11850532 | 0.96[ASN][1000 genomes] |
| rs17104979 | 0.82[ASN][1000 genomes] |
| rs2190872 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2238278 | 0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2238283 | 0.93[ASN][1000 genomes] |
| rs2238285 | 0.98[ASN][1000 genomes] |
| rs2239270 | 0.92[ASN][1000 genomes] |
| rs23219 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2332701 | 0.82[ASN][1000 genomes] |
| rs2332706 | 0.82[EUR][1000 genomes] |
| rs35077074 | 0.87[ASN][1000 genomes] |
| rs35479711 | 0.85[ASN][1000 genomes] |
| rs59307289 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3398985 | chr14:71927884-72404676 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv530794 | chr14:72113818-73034008 | Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
