Variant report

Variant	rs363296
Chromosome Location	chr10:119045730-119045731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119045547..119047705-chr10:119048465..119050984,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10082463	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10082478	0.86[AMR][1000 genomes]
rs10082507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787767	0.86[AMR][1000 genomes]
rs10787768	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10787769	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10787772	0.91[EUR][1000 genomes]
rs10886058	0.86[AMR][1000 genomes]
rs10886069	0.86[EUR][1000 genomes]
rs11197938	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197957	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197961	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197983	0.91[EUR][1000 genomes]
rs11197985	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12221325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12243925	0.88[EUR][1000 genomes]
rs12244411	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap]
rs12249877	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12250377	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12260782	0.91[EUR][1000 genomes]
rs12265713	0.86[AMR][1000 genomes]
rs12572369	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12573252	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17096103	0.83[AMR][1000 genomes]
rs2255321	0.85[AMR][1000 genomes]
rs2283142	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532808	0.83[ASN][1000 genomes]
rs363238	0.86[AMR][1000 genomes]
rs363256	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs363262	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs363279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4751621	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4751622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4752048	0.86[AMR][1000 genomes]
rs4752051	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752055	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7090219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72825515	0.86[AMR][1000 genomes]
rs72825561	0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs363296	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119032000-119050600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:119032400-119051000	Weak transcription	Ovary	ovary
3	chr10:119032600-119046200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:119032600-119063200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:119035400-119058000	Weak transcription	Small Intestine	intestine
6	chr10:119038800-119050000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr10:119040400-119050200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:119040800-119050600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:119041000-119050000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:119041200-119050000	Strong transcription	Liver	Liver
11	chr10:119041200-119051000	Weak transcription	Right Ventricle	heart
12	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:119041600-119046200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:119041800-119071600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:119042000-119050000	Strong transcription	Fetal Intestine Large	intestine
16	chr10:119042000-119053200	Weak transcription	Colonic Mucosa	Colon
17	chr10:119042200-119046400	Strong transcription	Duodenum Mucosa	Duodenum
18	chr10:119042200-119064200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:119042600-119046400	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:119042600-119046600	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:119042600-119046600	Strong transcription	HMEC	breast
22	chr10:119042600-119047200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr10:119042600-119047800	Strong transcription	Primary hematopoietic stem cells	blood
24	chr10:119042600-119049800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:119042600-119049800	Strong transcription	HepG2	liver
26	chr10:119042600-119050000	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr10:119042800-119046000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:119042800-119046000	Strong transcription	HSMM	muscle
29	chr10:119042800-119046400	Strong transcription	Primary B cells from cord blood	blood
30	chr10:119042800-119046600	Strong transcription	K562	blood
31	chr10:119042800-119050000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:119042800-119050600	Strong transcription	Dnd41	blood
33	chr10:119042800-119051400	Weak transcription	Brain Germinal Matrix	brain
34	chr10:119043000-119045800	Strong transcription	GM12878-XiMat	blood
35	chr10:119043000-119046400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:119043000-119046400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:119043000-119046800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:119043000-119050000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:119043000-119050200	Strong transcription	A549	lung
40	chr10:119043000-119069400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr10:119043000-119094400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:119043200-119046000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:119043200-119047000	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr10:119043200-119049600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:119043400-119046400	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr10:119043400-119047200	Genic enhancers	Primary T cells from cord blood	blood
47	chr10:119043400-119056800	Weak transcription	Brain Substantia Nigra	brain
48	chr10:119043400-119065600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:119043600-119046000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr10:119043800-119046200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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