Variant report

Variant	rs363303
Chromosome Location	chr10:119049993-119049994
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119045547..119047705-chr10:119048465..119050984,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10082478	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1008448	0.84[JPT][hapmap]
rs10787767	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787771	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10886058	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10886062	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11197938	0.84[AMR][1000 genomes]
rs11197968	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs11197969	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs11197981	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs12244411	0.92[JPT][hapmap]
rs12250377	0.82[AMR][1000 genomes]
rs12263512	0.80[CEU][hapmap]
rs12265713	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413507	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs12414644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12569963	0.88[ASN][1000 genomes]
rs12571779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12573009	0.80[CEU][hapmap];0.89[JPT][hapmap]
rs1860407	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1935167	0.87[CEU][hapmap];0.89[JPT][hapmap]
rs1954212	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2052075	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2153714	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2244249	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2244375	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2255321	0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2255367	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs2283142	0.82[AMR][1000 genomes]
rs2429505	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs2429508	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2487692	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2490626	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2490631	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532781	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532782	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532783	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532784	0.89[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532785	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532786	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532787	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532788	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532795	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs2532796	0.89[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2532809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532813	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532815	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532817	0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532834	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532835	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532836	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532838	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532839	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532840	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs2532841	0.84[JPT][hapmap]
rs2532842	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532844	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2794414	0.82[ASN][1000 genomes]
rs2794419	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2794421	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2794435	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2794436	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2803799	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2803801	0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2803802	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2803803	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2803804	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2803807	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2803809	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2803810	0.89[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2803816	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2901123	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3523	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs363227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363229	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363235	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs363236	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs363238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363240	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs363242	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363243	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs363271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363275	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs363276	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs363278	1.00[CEU][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs363282	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3814230	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs4751623	0.88[JPT][hapmap]
rs4752048	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752051	0.94[JPT][hapmap]
rs4752056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6585431	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs7070594	0.89[CEU][hapmap]
rs7072027	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs7086651	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs72825515	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7897828	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7898092	0.89[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7902237	0.84[JPT][hapmap]
rs887341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs979992	0.89[CEU][hapmap];0.89[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs363303	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119032000-119050600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:119032400-119051000	Weak transcription	Ovary	ovary
3	chr10:119032600-119063200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:119035400-119058000	Weak transcription	Small Intestine	intestine
5	chr10:119038800-119050000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:119040400-119050200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:119040800-119050600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:119041000-119050000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:119041200-119050000	Strong transcription	Liver	Liver
10	chr10:119041200-119051000	Weak transcription	Right Ventricle	heart
11	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr10:119041800-119071600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:119042000-119050000	Strong transcription	Fetal Intestine Large	intestine
14	chr10:119042000-119053200	Weak transcription	Colonic Mucosa	Colon
15	chr10:119042200-119064200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:119042600-119050000	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr10:119042800-119050000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:119042800-119050600	Strong transcription	Dnd41	blood
19	chr10:119042800-119051400	Weak transcription	Brain Germinal Matrix	brain
20	chr10:119043000-119050000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:119043000-119050200	Strong transcription	A549	lung
22	chr10:119043000-119069400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:119043000-119094400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:119043400-119056800	Weak transcription	Brain Substantia Nigra	brain
25	chr10:119043400-119065600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:119044600-119050400	Weak transcription	Fetal Brain Female	brain
27	chr10:119044600-119050600	Weak transcription	Psoas Muscle	Psoas
28	chr10:119044600-119050800	Weak transcription	Fetal Brain Male	brain
29	chr10:119044600-119051200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:119044600-119051400	Weak transcription	Esophagus	oesophagus
31	chr10:119044600-119060000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:119044800-119050800	Weak transcription	HSMMtube	muscle
33	chr10:119044800-119051600	Weak transcription	Spleen	Spleen
34	chr10:119044800-119051600	Weak transcription	Hela-S3	cervix
35	chr10:119044800-119077200	Weak transcription	NHDF-Ad	bronchial
36	chr10:119045000-119050600	Weak transcription	NHLF	lung
37	chr10:119045000-119050800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:119045000-119050800	Weak transcription	Brain Angular Gyrus	brain
39	chr10:119045000-119052000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:119045000-119053200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:119045000-119057000	Weak transcription	Fetal Lung	lung
42	chr10:119045000-119058200	Weak transcription	Fetal Intestine Small	intestine
43	chr10:119045000-119063200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:119045000-119063200	Weak transcription	Fetal Stomach	stomach
45	chr10:119045000-119070800	Weak transcription	Gastric	stomach
46	chr10:119045000-119081800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr10:119045400-119051600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr10:119045400-119053200	Weak transcription	Brain Anterior Caudate	brain
49	chr10:119045400-119055600	Weak transcription	Brain Hippocampus Middle	brain
50	chr10:119045400-119071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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