Variant report

Variant	rs36332
Chromosome Location	chr14:72396074-72396075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10138176	0.81[JPT][hapmap]
rs11621415	0.83[ASN][1000 genomes]
rs11623548	0.81[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs11623588	0.81[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs12433726	0.92[ASN][1000 genomes]
rs12590831	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs17093752	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1860104	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs1978225	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs1978227	0.81[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs2010848	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2190864	0.89[CEU][hapmap]
rs2190873	0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2191251	0.95[EUR][1000 genomes]
rs2238284	0.87[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.83[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2283424	0.81[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs2283426	0.81[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.80[TSI][hapmap]
rs2332687	0.94[EUR][1000 genomes]
rs2332699	0.91[ASN][1000 genomes]
rs36318	0.93[GIH][hapmap];0.81[YRI][hapmap]
rs36340	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36341	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36344	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36345	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36350	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36360	0.82[ASN][1000 genomes]
rs36361	0.82[ASN][1000 genomes]
rs36363	0.80[ASN][1000 genomes]
rs3825716	0.86[JPT][hapmap]
rs4899405	0.92[ASN][1000 genomes]
rs4902964	0.81[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.80[TSI][hapmap]
rs6574035	0.82[AFR][1000 genomes]
rs7148606	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7152936	0.82[ASN][1000 genomes]
rs7152951	0.85[ASN][1000 genomes]
rs7155855	0.81[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap]
rs960431	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs36332	DLST	cis	cerebellum	SCAN
rs36332	ACTN1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72386200-72396800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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