Variant report

Variant	rs36348
Chromosome Location	chr14:72388475-72388476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72372812..72375508-chr14:72386588..72389272,2	MCF-7	breast:
2	chr14:72379036..72382191-chr14:72388206..72391072,3	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1009018	0.85[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873248	0.85[EUR][1000 genomes]
rs17768054	1.00[ASN][1000 genomes]
rs1978226	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs2109268	0.85[CEU][hapmap]
rs2190871	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs2190874	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215133	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2877772	0.96[EUR][1000 genomes]
rs2877773	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36319	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36320	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36321	0.88[EUR][1000 genomes]
rs36322	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36323	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36324	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36325	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36328	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36329	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36330	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36331	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36333	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36334	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36337	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36338	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36339	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36346	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36347	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36358	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36362	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36364	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36365	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36367	1.00[ASN][1000 genomes]
rs36371	1.00[ASN][1000 genomes]
rs36374	1.00[ASN][1000 genomes]
rs36400	1.00[ASN][1000 genomes]
rs36402	1.00[ASN][1000 genomes]
rs36407	1.00[ASN][1000 genomes]
rs36413	1.00[ASN][1000 genomes]
rs36414	1.00[ASN][1000 genomes]
rs4243639	0.82[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598834	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899406	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899408	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902959	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902962	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902967	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs4902968	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs4902969	0.83[EUR][1000 genomes]
rs4902970	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs61996396	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574036	0.86[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161413	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs722975	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728494	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728495	0.85[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728498	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs758236	0.85[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004427	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs8011972	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014500	0.85[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917392	0.85[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806063	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs991890	0.92[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1345	chr14:72349589-72395819	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72386000-72390200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:72386200-72396800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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