Variant report

Variant	rs36764
Chromosome Location	chr5:97898189-97898190
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10042687	0.81[ASN][1000 genomes]
rs10053301	0.82[ASN][1000 genomes]
rs10478691	0.82[ASN][1000 genomes]
rs10478706	0.82[ASN][1000 genomes]
rs10478722	0.82[ASN][1000 genomes]
rs10478759	0.82[ASN][1000 genomes]
rs12515428	0.82[ASN][1000 genomes]
rs1422719	0.82[ASN][1000 genomes]
rs1549121	0.82[ASN][1000 genomes]
rs1559130	0.82[ASN][1000 genomes]
rs1559131	0.82[ASN][1000 genomes]
rs1560180	0.82[ASN][1000 genomes]
rs168654	0.86[ASN][1000 genomes]
rs173453	0.86[ASN][1000 genomes]
rs185181	0.87[ASN][1000 genomes]
rs189837	0.87[ASN][1000 genomes]
rs192233	0.86[ASN][1000 genomes]
rs2112660	0.82[ASN][1000 genomes]
rs28588552	0.82[ASN][1000 genomes]
rs28622885	0.82[ASN][1000 genomes]
rs3849788	0.81[ASN][1000 genomes]
rs3860805	0.81[ASN][1000 genomes]
rs405267	0.86[ASN][1000 genomes]
rs457051	0.87[ASN][1000 genomes]
rs461933	0.85[ASN][1000 genomes]
rs469028	0.87[ASN][1000 genomes]
rs6595648	0.81[ASN][1000 genomes]
rs6865769	0.81[ASN][1000 genomes]
rs6874177	0.82[ASN][1000 genomes]
rs6888021	0.82[ASN][1000 genomes]
rs7708004	0.82[ASN][1000 genomes]
rs7709076	0.82[ASN][1000 genomes]
rs7716638	0.81[ASN][1000 genomes]
rs985150	0.82[ASN][1000 genomes]
rs985579	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3401686	chr5:97881101-97900528	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97893000-97905200	Weak transcription	NHLF	lung
2	chr5:97896400-97899200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:97897400-97902800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:97897600-97898200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:97897800-97898200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:97898000-97899400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:97898000-97899600	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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