Variant report

Variant	rs367959000
Chromosome Location	chr6:80816565-80816566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:77600897..77601550-chr6:80816034..80816884,2	NB4	blood:
2	chr6:80815077..80817880-chr6:80835991..80839240,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000005812	Chromatin interaction
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398521	chr6:80816133-80818281	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80815200-80817400	Active TSS	Fetal Kidney	kidney
2	chr6:80815400-80816800	Active TSS	Rectal Smooth Muscle	rectum
3	chr6:80815400-80817400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:80815600-80816600	Active TSS	Primary T cells fromperipheralblood	blood
5	chr6:80815600-80816600	Active TSS	Duodenum Mucosa	Duodenum
6	chr6:80815600-80816600	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr6:80815600-80816600	Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr6:80815600-80816600	Active TSS	HepG2	liver
9	chr6:80815600-80816800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr6:80815600-80816800	Active TSS	Fetal Brain Female	brain
11	chr6:80815600-80816800	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr6:80815600-80817000	Active TSS	Brain Cingulate Gyrus	brain
13	chr6:80815600-80817000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:80815600-80817000	Active TSS	Right Atrium	heart
15	chr6:80815600-80817000	Active TSS	A549	lung
16	chr6:80815600-80817200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:80815600-80817200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:80815600-80817200	Active TSS	Brain Hippocampus Middle	brain
19	chr6:80815600-80817200	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr6:80815600-80817200	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr6:80815600-80817400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:80815600-80817400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:80815600-80817400	Active TSS	Fetal Intestine Large	intestine
24	chr6:80815600-80817400	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr6:80815600-80817400	Active TSS	K562	blood
26	chr6:80815600-80817800	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr6:80815600-80817800	Active TSS	Stomach Smooth Muscle	stomach
28	chr6:80815600-80819200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:80815800-80816600	Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr6:80815800-80816600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:80815800-80816600	Active TSS	Colonic Mucosa	Colon
32	chr6:80815800-80816600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr6:80815800-80816600	Active TSS	Fetal Muscle Leg	muscle
34	chr6:80815800-80816600	Active TSS	Placenta	Placenta
35	chr6:80815800-80816800	Active TSS	Primary T cells from cord blood	blood
36	chr6:80815800-80816800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:80815800-80816800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:80815800-80816800	Active TSS	Brain Angular Gyrus	brain
39	chr6:80815800-80816800	Active TSS	Fetal Intestine Small	intestine
40	chr6:80815800-80816800	Active TSS	Fetal Muscle Trunk	muscle
41	chr6:80815800-80816800	Active TSS	Fetal Stomach	stomach
42	chr6:80815800-80816800	Active TSS	Fetal Thymus	thymus
43	chr6:80815800-80816800	Active TSS	Stomach Mucosa	stomach
44	chr6:80815800-80816800	Active TSS	Thymus	Thymus
45	chr6:80815800-80816800	Active TSS	HSMM	muscle
46	chr6:80815800-80816800	Active TSS	NH-A	brain
47	chr6:80815800-80817000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:80815800-80817000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:80815800-80817000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr6:80815800-80817000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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