Variant report

Variant	rs368058
Chromosome Location	chr7:101885636-101885637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101880453..101884084-chr7:101884489..101887289,4	K562	blood:
2	chr7:101880453..101882752-chr7:101884742..101886586,2	K562	blood:
3	chr7:101884362..101885948-chr7:101889654..101892002,2	MCF-7	breast:
4	chr7:101459322..101461640-chr7:101884735..101887609,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction
ENSG00000264642	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10270614	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10808119	0.94[EUR][1000 genomes]
rs1124297	0.84[EUR][1000 genomes]
rs2529114	0.80[AMR][1000 genomes]
rs28485359	0.84[EUR][1000 genomes]
rs367634	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs368214	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs369547	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs372968	0.84[ASN][1000 genomes]
rs385417	0.81[ASN][1000 genomes]
rs402529	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs407943	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs416276	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs423452	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs424549	0.81[EUR][1000 genomes]
rs426954	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs427941	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs434624	0.84[ASN][1000 genomes]
rs437060	0.81[ASN][1000 genomes]
rs438635	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs445646	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs448665	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs449785	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs449806	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs451352	0.82[EUR][1000 genomes]
rs6465852	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6970036	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
3	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101852800-101897000	Weak transcription	NHEK	skin
5	chr7:101854400-101894800	Weak transcription	K562	blood
6	chr7:101858400-101897600	Weak transcription	Psoas Muscle	Psoas
7	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:101866000-101892600	Weak transcription	Osteobl	bone
9	chr7:101866000-101896400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:101866800-101907600	Weak transcription	NH-A	brain
11	chr7:101867400-101898000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:101867400-101898000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:101867800-101900400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:101868000-101894000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:101869600-101887800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:101870000-101894200	Strong transcription	Fetal Thymus	thymus
17	chr7:101870200-101898000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr7:101870400-101895800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:101871800-101891600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:101872400-101898800	Weak transcription	Brain Angular Gyrus	brain
21	chr7:101872400-101904000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:101872600-101886800	Strong transcription	Thymus	Thymus
23	chr7:101872600-101889600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr7:101872800-101892000	Weak transcription	Small Intestine	intestine
25	chr7:101873600-101894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:101873600-101904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:101874800-101886400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:101875200-101886600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:101875600-101894200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:101875600-101898000	Strong transcription	Dnd41	blood
31	chr7:101877600-101895400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr7:101878000-101894400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:101878600-101885800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:101878600-101893400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr7:101878600-101895800	Weak transcription	HSMMtube	muscle
36	chr7:101878600-101896000	Weak transcription	HSMM	muscle
37	chr7:101878600-101896200	Weak transcription	Brain Anterior Caudate	brain
38	chr7:101880400-101886200	Strong transcription	Fetal Muscle Leg	muscle
39	chr7:101880400-101886400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:101880400-101886800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr7:101880400-101898400	Strong transcription	Fetal Stomach	stomach
42	chr7:101880600-101886200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:101880800-101887200	Strong transcription	Placenta	Placenta
44	chr7:101881400-101886400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr7:101881600-101886400	Strong transcription	Lung	lung
46	chr7:101881800-101893800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr7:101882000-101886200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:101882000-101886200	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr7:101882000-101886200	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr7:101882000-101886200	Strong transcription	Rectal Mucosa Donor 29	rectum

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