Variant report

Variant	rs368214
Chromosome Location	chr7:101892328-101892329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101891357..101895584-chr7:101915968..101918004,3	MCF-7	breast:
2	chr7:101890622..101893389-chr7:101894952..101897089,3	K562	blood:
3	chr7:101885932..101887967-chr7:101892094..101894879,2	K562	blood:
4	chr7:101888648..101890860-chr7:101891025..101893521,3	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10270614	0.80[AMR][1000 genomes]
rs2529114	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs367634	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs368058	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs369547	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs402529	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs407943	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs416276	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs423452	0.85[AMR][1000 genomes]
rs426954	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs427941	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs438635	0.84[AMR][1000 genomes]
rs445646	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs448665	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs449806	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6465852	0.86[AMR][1000 genomes]
rs6970036	0.86[AMR][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
2	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:101852800-101897000	Weak transcription	NHEK	skin
4	chr7:101854400-101894800	Weak transcription	K562	blood
5	chr7:101858400-101897600	Weak transcription	Psoas Muscle	Psoas
6	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:101866000-101892600	Weak transcription	Osteobl	bone
8	chr7:101866000-101896400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:101866800-101907600	Weak transcription	NH-A	brain
10	chr7:101867400-101898000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr7:101867400-101898000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr7:101867800-101900400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:101868000-101894000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:101870000-101894200	Strong transcription	Fetal Thymus	thymus
15	chr7:101870200-101898000	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:101870400-101895800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:101872400-101898800	Weak transcription	Brain Angular Gyrus	brain
18	chr7:101872400-101904000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:101873600-101894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:101873600-101904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:101875600-101894200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:101875600-101898000	Strong transcription	Dnd41	blood
23	chr7:101877600-101895400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:101878000-101894400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:101878600-101893400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr7:101878600-101895800	Weak transcription	HSMMtube	muscle
27	chr7:101878600-101896000	Weak transcription	HSMM	muscle
28	chr7:101878600-101896200	Weak transcription	Brain Anterior Caudate	brain
29	chr7:101880400-101898400	Strong transcription	Fetal Stomach	stomach
30	chr7:101881800-101893800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:101882800-101894800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr7:101883000-101896600	Weak transcription	NHLF	lung
33	chr7:101883000-101904000	Weak transcription	Fetal Brain Female	brain
34	chr7:101883400-101895000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr7:101884000-101893400	Weak transcription	Primary B cells from cord blood	blood
36	chr7:101884200-101904000	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:101884400-101895200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr7:101884600-101892600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr7:101884800-101892800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:101884800-101893200	Weak transcription	Fetal Kidney	kidney
41	chr7:101885000-101892600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr7:101885200-101893200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:101885200-101894400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr7:101885200-101898400	Strong transcription	Fetal Intestine Small	intestine
45	chr7:101885200-101901800	Weak transcription	A549	lung
46	chr7:101885400-101894400	Strong transcription	Fetal Intestine Large	intestine
47	chr7:101885600-101899400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr7:101886200-101892600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr7:101886200-101893400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr7:101886200-101893400	Weak transcription	Brain Inferior Temporal Lobe	brain

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