Variant report

Variant	rs368227576
Chromosome Location	chr14:56108476-56108477
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr14:56108393-56108531	K562	blood:	n/a	n/a

Variant related genes	Relation type
KTN1	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1792376	chr14:56108007-56150151	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
2	chr14:56079800-56111400	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr14:56080800-56110800	Strong transcription	Primary T helper cells PMA-I stimulated	--
4	chr14:56087400-56111800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr14:56087400-56112200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:56087400-56132200	Strong transcription	Dnd41	blood
7	chr14:56087600-56110000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:56087600-56145200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:56088200-56108600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:56088200-56129400	Weak transcription	Spleen	Spleen
11	chr14:56088200-56132200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:56088400-56121600	Weak transcription	Aorta	Aorta
13	chr14:56088400-56121800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:56088400-56153200	Weak transcription	Gastric	stomach
15	chr14:56092800-56135400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:56093200-56110000	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr14:56093800-56110000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr14:56094200-56110000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:56094200-56110200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:56094400-56109800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:56094400-56113000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:56094400-56132600	Strong transcription	HSMM	muscle
23	chr14:56094600-56110000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:56094600-56110200	Strong transcription	Liver	Liver
25	chr14:56095000-56142200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:56096200-56112000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:56096600-56109400	Strong transcription	GM12878-XiMat	blood
28	chr14:56097600-56115600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:56097600-56145200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:56097600-56155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:56098600-56121600	Weak transcription	Small Intestine	intestine
32	chr14:56099000-56128000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:56099400-56118600	Strong transcription	Hela-S3	cervix
34	chr14:56099800-56110000	Strong transcription	Fetal Thymus	thymus
35	chr14:56100000-56109000	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:56100200-56131000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:56100400-56109800	Strong transcription	Placenta	Placenta
38	chr14:56100400-56110200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr14:56100400-56112600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr14:56100800-56109800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr14:56100800-56109800	Strong transcription	A549	lung
42	chr14:56100800-56112200	Strong transcription	Duodenum Mucosa	Duodenum
43	chr14:56101000-56132800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr14:56101400-56112800	Strong transcription	Primary B cells from cord blood	blood
45	chr14:56101800-56109200	Strong transcription	NHDF-Ad	bronchial
46	chr14:56101800-56118200	Weak transcription	Fetal Brain Female	brain
47	chr14:56101800-56121600	Weak transcription	Pancreas	Pancrea
48	chr14:56101800-56123200	Weak transcription	Fetal Intestine Small	intestine
49	chr14:56101800-56128800	Weak transcription	Fetal Stomach	stomach
50	chr14:56101800-56162800	Weak transcription	Brain Germinal Matrix	brain

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