Variant report

Variant	rs368349668
Chromosome Location	chr18:30351387-30351388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448189	chr18:30350054-30353852	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3362586	chr18:30350779-30353327	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3342953	chr18:30350854-30353352	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30348800-30353600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr18:30349200-30351600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:30349200-30352600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:30349200-30353600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr18:30349400-30351600	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chr18:30349400-30352400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
7	chr18:30349400-30352600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr18:30349400-30352600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr18:30349400-30352600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr18:30349600-30351400	Flanking Active TSS	Right Ventricle	heart
11	chr18:30349600-30352000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
12	chr18:30349600-30352200	Bivalent/Poised TSS	Small Intestine	intestine
13	chr18:30349600-30352400	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr18:30349600-30352400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
15	chr18:30349600-30352600	Bivalent/Poised TSS	Psoas Muscle	Psoas
16	chr18:30349800-30351400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
17	chr18:30349800-30351600	Bivalent Enhancer	Stomach Mucosa	stomach
18	chr18:30349800-30352000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
19	chr18:30349800-30352400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
20	chr18:30350000-30351600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
21	chr18:30350200-30351400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr18:30350200-30351400	Active TSS	Right Atrium	heart
23	chr18:30350200-30351600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr18:30350200-30352400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr18:30350200-30352400	Active TSS	HepG2	liver
26	chr18:30350200-30352600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr18:30350200-30352800	Active TSS	Fetal Kidney	kidney
28	chr18:30350400-30351800	Bivalent Enhancer	HMEC	breast
29	chr18:30350600-30351400	Bivalent/Poised TSS	Spleen	Spleen
30	chr18:30350600-30351600	Enhancers	Fetal Heart	heart
31	chr18:30350600-30352600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
32	chr18:30350600-30352600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr18:30350800-30351400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
34	chr18:30350800-30351400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr18:30350800-30351400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
36	chr18:30350800-30351400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
37	chr18:30350800-30351400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
38	chr18:30350800-30351400	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr18:30350800-30351400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
40	chr18:30350800-30351400	Flanking Bivalent TSS/Enh	Sigmoid Colon	Sigmoid Colon
41	chr18:30350800-30351400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
42	chr18:30350800-30351600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr18:30350800-30351600	Flanking Bivalent TSS/Enh	Liver	Liver
44	chr18:30350800-30351600	Flanking Bivalent TSS/Enh	Placenta	Placenta
45	chr18:30350800-30351600	Flanking Active TSS	Pancreas	Pancrea
46	chr18:30350800-30351600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
47	chr18:30350800-30351600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
48	chr18:30350800-30351600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
49	chr18:30350800-30351800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr18:30350800-30351800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links