Variant report

Variant	rs369547
Chromosome Location	chr7:101886059-101886060
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101880453..101884084-chr7:101884489..101887289,4	K562	blood:
2	chr7:101880453..101882752-chr7:101884742..101886586,2	K562	blood:
3	chr7:101459322..101461640-chr7:101884735..101887609,2	MCF-7	breast:
4	chr7:101885932..101887967-chr7:101892094..101894879,2	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction
ENSG00000264642	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10270614	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10808119	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1108056	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1124297	0.84[EUR][1000 genomes]
rs12537077	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2529114	0.80[AMR][1000 genomes]
rs28485359	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs367634	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs368058	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs368214	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs372968	0.86[ASN][1000 genomes]
rs376244	0.81[ASN][1000 genomes]
rs385417	0.83[ASN][1000 genomes]
rs402529	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs407943	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs416276	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs423452	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs424549	0.81[EUR][1000 genomes]
rs426954	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs427941	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs434624	0.86[ASN][1000 genomes]
rs437060	0.83[ASN][1000 genomes]
rs438635	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs445646	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs448665	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs449785	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs449806	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs451352	0.82[EUR][1000 genomes]
rs6465852	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6970036	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6976947	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs7801259	0.82[CEU][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs369547	CUX1	cis	parietal	SCAN
rs369547	TRIM4	cis	cerebellum	SCAN
rs369547	EPHB4	cis	parietal	SCAN
rs369547	STAG3	cis	cerebellum	SCAN
rs369547	RANBP2	trans	parietal	SCAN
rs369547	FAM185A	cis	lymphoblastoid	seeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101838400-101889400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
3	chr7:101852400-101893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101852800-101897000	Weak transcription	NHEK	skin
5	chr7:101854400-101894800	Weak transcription	K562	blood
6	chr7:101858400-101897600	Weak transcription	Psoas Muscle	Psoas
7	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:101866000-101892600	Weak transcription	Osteobl	bone
9	chr7:101866000-101896400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:101866800-101907600	Weak transcription	NH-A	brain
11	chr7:101867400-101898000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:101867400-101898000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:101867800-101900400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:101868000-101894000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:101869600-101887800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:101870000-101894200	Strong transcription	Fetal Thymus	thymus
17	chr7:101870200-101898000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr7:101870400-101895800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:101871800-101891600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:101872400-101898800	Weak transcription	Brain Angular Gyrus	brain
21	chr7:101872400-101904000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:101872600-101886800	Strong transcription	Thymus	Thymus
23	chr7:101872600-101889600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr7:101872800-101892000	Weak transcription	Small Intestine	intestine
25	chr7:101873600-101894600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:101873600-101904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:101874800-101886400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:101875200-101886600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:101875600-101894200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:101875600-101898000	Strong transcription	Dnd41	blood
31	chr7:101877600-101895400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr7:101878000-101894400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:101878600-101893400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr7:101878600-101895800	Weak transcription	HSMMtube	muscle
35	chr7:101878600-101896000	Weak transcription	HSMM	muscle
36	chr7:101878600-101896200	Weak transcription	Brain Anterior Caudate	brain
37	chr7:101880400-101886200	Strong transcription	Fetal Muscle Leg	muscle
38	chr7:101880400-101886400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:101880400-101886800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr7:101880400-101898400	Strong transcription	Fetal Stomach	stomach
41	chr7:101880600-101886200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:101880800-101887200	Strong transcription	Placenta	Placenta
43	chr7:101881400-101886400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr7:101881600-101886400	Strong transcription	Lung	lung
45	chr7:101881800-101893800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:101882000-101886200	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr7:101882000-101886200	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr7:101882000-101886200	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr7:101882000-101886200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr7:101882000-101886400	Strong transcription	Liver	Liver

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