Variant report

Variant	rs369554788
Chromosome Location	chr6:101056118-101056119
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604263	chr6:100980874-101078718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv463986	chr6:100995048-101084946	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv604264	chr6:100995048-101084946	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886446	chr6:101018032-101084946	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886447	chr6:101018032-101091434	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv463987	chr6:101036713-101078718	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv604265	chr6:101036713-101078718	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv470848	chr6:101036713-101102584	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv463988	chr6:101036713-101158950	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv604266	chr6:101036713-101158950	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv463989	chr6:101039215-101078718	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv604267	chr6:101039215-101078718	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv1840320	chr6:101039215-101102585	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv604268	chr6:101049108-101091434	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv886454	chr6:101049108-101123503	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv886455	chr6:101049108-101203051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv886456	chr6:101049108-101277926	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	esv1835914	chr6:101054054-101094554	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	esv1836506	chr6:101054054-101094554	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	esv3440112	chr6:101054856-101058104	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv3334239	chr6:101055231-101057729	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv3323160	chr6:101055481-101057279	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101009000-101065600	Weak transcription	NHEK	skin
2	chr6:101011000-101080800	Weak transcription	HepG2	liver
3	chr6:101016400-101065800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:101017200-101069400	Weak transcription	Fetal Lung	lung
5	chr6:101017800-101069800	Weak transcription	Lung	lung
6	chr6:101020400-101066200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:101025800-101099800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:101027800-101070000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:101028000-101068800	Weak transcription	Psoas Muscle	Psoas
10	chr6:101030200-101070000	Weak transcription	Aorta	Aorta
11	chr6:101032400-101102000	Weak transcription	Thymus	Thymus
12	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:101032600-101102000	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:101032800-101065600	Weak transcription	Colonic Mucosa	Colon
16	chr6:101033600-101057600	Weak transcription	Brain Angular Gyrus	brain
17	chr6:101033800-101065400	Weak transcription	Hela-S3	cervix
18	chr6:101034000-101085000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:101034400-101066200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:101034400-101084200	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:101034400-101092400	Weak transcription	Pancreas	Pancrea
22	chr6:101035400-101065600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:101035800-101070000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:101036000-101064600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:101036000-101075200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:101036000-101084800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:101036200-101073000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:101036200-101084000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:101037400-101110600	Weak transcription	K562	blood
30	chr6:101037600-101056400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:101037600-101057000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:101037600-101071200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:101037600-101072200	Weak transcription	Adipose Nuclei	Adipose
34	chr6:101037800-101107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:101038000-101073200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:101038000-101084200	Weak transcription	Fetal Thymus	thymus
37	chr6:101038600-101065400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:101039200-101071200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:101041800-101065600	Weak transcription	HSMMtube	muscle
40	chr6:101043800-101070200	Weak transcription	Spleen	Spleen
41	chr6:101048600-101065600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:101049000-101065400	Weak transcription	Ovary	ovary
43	chr6:101049000-101066200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:101049000-101066200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:101049200-101065600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:101049200-101066000	Weak transcription	Left Ventricle	heart
47	chr6:101049400-101065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:101049400-101069400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:101049400-101069400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:101049400-101069400	Weak transcription	Rectal Mucosa Donor 31	rectum

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