Variant report

Variant	rs369563335
Chromosome Location	chr19:43038929-43038930
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1057390	chr19:43003323-43173028	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv482597	chr19:43037214-43222644	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:43033600-43043000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr19:43033600-43043800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:43033600-43044200	Weak transcription	Gastric	stomach
4	chr19:43033800-43039200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr19:43033800-43040000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr19:43033800-43043400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr19:43033800-43044200	Weak transcription	Brain Substantia Nigra	brain
8	chr19:43034000-43039800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr19:43034000-43043000	Weak transcription	Adipose Nuclei	Adipose
10	chr19:43034200-43043600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr19:43036800-43042800	Weak transcription	HMEC	breast
12	chr19:43037400-43039400	Weak transcription	Brain Anterior Caudate	brain
13	chr19:43037600-43039200	Weak transcription	Brain Hippocampus Middle	brain
14	chr19:43037600-43042800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr19:43038400-43039000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr19:43038400-43039600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr19:43038400-43041000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr19:43038800-43041400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr19:43038800-43043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr19:43038800-43044000	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links