Variant report

Variant	rs369709644
Chromosome Location	chr20:25990397-25990398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182A-6	chr20:25990334-25991091	NONHSAT079206

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758517	chr20:25701992-26319569	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
2	esv2758790	chr20:25701992-26319569	Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv470545	chr20:25715507-26309255	Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv1059041	chr20:25832105-26007269	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1060065	chr20:25832105-26305567	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
6	nsv962569	chr20:25876021-26152500	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv585761	chr20:25892571-26299677	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
8	esv3518424	chr20:25911038-26051227	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv3518425	chr20:25911125-26051144	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1060508	chr20:25918612-26305567	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
11	nsv1057970	chr20:25937126-26305567	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
12	nsv1059447	chr20:25941928-26305567	Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
13	nsv1067411	chr20:25955110-26305567	Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
14	nsv1065198	chr20:25959162-26305567	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
15	esv3493532	chr20:25972821-26045537	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
16	esv3493533	chr20:25972821-26045537	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
17	esv3528526	chr20:25988952-26027050	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv3528527	chr20:25988952-26027050	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
19	esv14698	chr20:25989773-26056362	Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
20	esv3495632	chr20:25990002-26013500	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
21	esv3495633	chr20:25990002-26013500	Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv585769	chr20:25990002-26045575	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv9797	chr20:25990371-26051189	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25989600-25990400	Active TSS	HepG2	liver
2	chr20:25989600-25991600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr20:25989800-25990400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr20:25989800-25990400	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr20:25989800-25990400	Enhancers	Spleen	Spleen
6	chr20:25989800-25990600	Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr20:25989800-25991600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr20:25989800-25991600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:25989800-25991600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr20:25989800-25991600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:25989800-25991600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr20:25989800-25991600	Active TSS	Brain Cingulate Gyrus	brain
13	chr20:25989800-25991600	Active TSS	A549	lung
14	chr20:25990000-25990600	Active TSS	Fetal Lung	lung
15	chr20:25990000-25990600	Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr20:25990000-25990800	Active TSS	Adipose Nuclei	Adipose
17	chr20:25990000-25990800	Active TSS	Fetal Thymus	thymus
18	chr20:25990000-25991000	Active TSS	Fetal Muscle Leg	muscle
19	chr20:25990000-25991000	Active TSS	Fetal Stomach	stomach
20	chr20:25990000-25991000	Active TSS	Rectal Smooth Muscle	rectum
21	chr20:25990000-25991400	Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr20:25990000-25991400	Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr20:25990000-25991400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr20:25990000-25991400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr20:25990000-25991400	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr20:25990000-25991400	Active TSS	Fetal Brain Female	brain
27	chr20:25990000-25991400	Active TSS	Fetal Kidney	kidney
28	chr20:25990000-25991400	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr20:25990000-25991400	Active TSS	Psoas Muscle	Psoas
30	chr20:25990000-25991400	Active TSS	Right Atrium	heart
31	chr20:25990000-25991600	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr20:25990000-25991600	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr20:25990000-25991600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr20:25990000-25991600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr20:25990000-25991600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr20:25990000-25991600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr20:25990000-25991600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr20:25990000-25991600	Active TSS	Muscle Satellite Cultured Cells	--
39	chr20:25990000-25991600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr20:25990000-25991600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr20:25990000-25991600	Active TSS	Brain Germinal Matrix	brain
42	chr20:25990000-25991600	Active TSS	Brain Hippocampus Middle	brain
43	chr20:25990000-25991600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr20:25990000-25991600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr20:25990000-25991600	Active TSS	Fetal Intestine Small	intestine
46	chr20:25990000-25991600	Active TSS	Fetal Muscle Trunk	muscle
47	chr20:25990000-25991600	Active TSS	Right Ventricle	heart
48	chr20:25990000-25991600	Active TSS	Stomach Smooth Muscle	stomach
49	chr20:25990000-25991600	Active TSS	Hela-S3	cervix
50	chr20:25990000-25991600	Active TSS	HSMM	muscle

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