Variant report

Variant	rs369783991
Chromosome Location	chr14:66258256-66258257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66221986..66224383-chr14:66256586..66258647,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
2	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv817409	chr14:66220075-66990168	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
8	nsv1052389	chr14:66255781-66321562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3360408	chr14:66257800-66258652	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66256400-66259200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr14:66256600-66260200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:66257200-66258600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:66257200-66259400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr14:66257400-66258400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:66257600-66258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:66257600-66259000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:66258000-66258400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:66258000-66258400	Enhancers	Primary T cells from cord blood	blood
10	chr14:66258000-66258400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr14:66258000-66258400	Enhancers	Fetal Thymus	thymus
12	chr14:66258000-66259400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr14:66258200-66258400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:66258200-66258400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr14:66258200-66258400	Flanking Active TSS	Fetal Lung	lung
16	chr14:66258200-66258600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:66258200-66258600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:66258200-66258600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:66258200-66258600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr14:66258200-66258600	Enhancers	Spleen	Spleen
21	chr14:66258200-66258600	Enhancers	NH-A	brain
22	chr14:66258200-66258800	Genic enhancers	H9 Cell Line	embryonic stem cell
23	chr14:66258200-66258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:66258200-66259000	Enhancers	Right Atrium	heart
25	chr14:66258200-66259000	Enhancers	Hela-S3	cervix
26	chr14:66258200-66259200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:66258200-66259400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr14:66258200-66259400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:66258200-66259400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr14:66258200-66259600	Enhancers	HMEC	breast
31	chr14:66258200-66259600	Enhancers	HSMM	muscle
32	chr14:66258200-66259600	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links