Variant report

Variant	rs370196989
Chromosome Location	chr11:47206809-47206810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:47204907-47209088	HepG2	liver:	n/a	n/a
2	POLR2A	chr11:47206807-47207594	HepG2	liver:	n/a	n/a
3	MAZ	chr11:47206739-47208699	Hela-S3	cervix:	n/a	chr11:47207005-47207015 chr11:47207105-47207115 chr11:47207475-47207485 chr11:47207774-47207784 chr11:47208558-47208565
4	POLR2A	chr11:47206354-47209173	HepG2	liver:	n/a	n/a
5	RXRA	chr11:47206197-47206926	HepG2	liver:	n/a	n/a
6	FOS	chr11:47206794-47207369	MCF10A-Er-Src	breast:	n/a	chr11:47206924-47206935 chr11:47206925-47206933
7	POLR2A	chr11:47206648-47209488	Hela-S3	cervix:	n/a	n/a
8	YY1	chr11:47205999-47208165	HepG2	liver:	n/a	chr11:47208079-47208090 chr11:47207478-47207492 chr11:47207856-47207870 chr11:47207861-47207870 chr11:47207011-47207022 chr11:47207117-47207131
9	MYBL2	chr11:47206092-47207498	HepG2	liver:	n/a	n/a
10	SIN3A	chr11:47206728-47209436	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr11:47205478-47209283	HepG2	liver:	n/a	chr11:47207005-47207015 chr11:47208870-47208880 chr11:47207105-47207115 chr11:47207475-47207485 chr11:47207774-47207784 chr11:47208558-47208565
12	SMC3	chr11:47206759-47208652	Hela-S3	cervix:	n/a	n/a
13	CHD2	chr11:47206359-47207815	HepG2	liver:	n/a	chr11:47207010-47207020 chr11:47207603-47207613
14	FOSL2	chr11:47206684-47207146	A549	lung:	n/a	chr11:47206924-47206935 chr11:47206925-47206933
15	POLR2A	chr11:47206762-47209024	Hela-S3	cervix:	n/a	n/a
16	TBP	chr11:47206223-47207586	HepG2	liver:	n/a	n/a
17	GABPA	chr11:47206741-47207421	H1-hESC	embryonic stem cell:	n/a	n/a
18	CEBPD	chr11:47206286-47207614	HepG2	liver:	n/a	n/a
19	MAX	chr11:47206124-47206859	HepG2	liver:	n/a	n/a
20	TFAP2A	chr11:47206434-47207951	Hela-S3	cervix:	n/a	chr11:47207857-47207868 chr11:47207514-47207525 chr11:47207591-47207603 chr11:47207516-47207524 chr11:47207515-47207530 chr11:47207775-47207786 chr11:47207516-47207524 chr11:47207516-47207524
21	POLR2A	chr11:47206412-47207411	HepG2	liver:	n/a	n/a
22	POLR2A	chr11:47206717-47208765	Hela-S3	cervix:	n/a	n/a
23	E2F4	chr11:47206806-47207293	MCF10A-Er-Src	breast:	n/a	n/a
24	SP1	chr11:47206797-47207395	H1-hESC	embryonic stem cell:	n/a	chr11:47207016-47207025 chr11:47207137-47207151 chr11:47207010-47207022 chr11:47207110-47207122 chr11:47207015-47207027 chr11:47207012-47207026 chr11:47207111-47207120 chr11:47207110-47207121 chr11:47207011-47207020 chr11:47207015-47207027 chr11:47207168-47207175 chr11:47207007-47207021 chr11:47207107-47207121
25	NFIC	chr11:47206180-47206814	HepG2	liver:	n/a	n/a
26	TFAP2C	chr11:47206328-47207954	Hela-S3	cervix:	n/a	chr11:47207258-47207273
27	JUND	chr11:47206725-47207384	A549	lung:	n/a	chr11:47206924-47206935 chr11:47206925-47206933
28	HNF4A	chr11:47205752-47207458	HepG2	liver:	n/a	chr11:47206582-47206595 chr11:47205795-47205809 chr11:47206583-47206595 chr11:47206580-47206598 chr11:47205797-47205805 chr11:47205796-47205809
29	NR2F2	chr11:47206282-47207990	MCF-7	breast:	n/a	n/a
30	ZBTB7A	chr11:47206741-47208157	ECC-1	luminal epithelium:	n/a	chr11:47207621-47207629
31	POLR2A	chr11:47206158-47207517	HepG2	liver:	n/a	n/a
32	MAZ	chr11:47206259-47209176	HepG2	liver:	n/a	chr11:47207005-47207015 chr11:47208870-47208880 chr11:47207105-47207115 chr11:47207475-47207485 chr11:47207774-47207784 chr11:47208558-47208565
33	MAX	chr11:47206741-47208902	Hela-S3	cervix:	n/a	chr11:47207005-47207015 chr11:47208870-47208880 chr11:47207105-47207115 chr11:47207475-47207485 chr11:47207774-47207784 chr11:47208558-47208565
34	MBD4	chr11:47206313-47206924	HepG2	liver:	n/a	n/a
35	E2F1	chr11:47206793-47208162	Hela-S3	cervix:	n/a	chr11:47207859-47207869
36	HDAC2	chr11:47206781-47207473	HepG2	liver:	n/a	n/a
37	RFX5	chr11:47206051-47207396	HepG2	liver:	n/a	n/a
38	POLR2A	chr11:47206518-47208836	Hela-S3	cervix:	n/a	n/a
39	POLR2A	chr11:47206669-47209147	H1-hESC	embryonic stem cell:	n/a	n/a
40	CREB1	chr11:47206695-47207489	H1-hESC	embryonic stem cell:	n/a	n/a
41	SIN3AK20	chr11:47206303-47207803	MCF-7	breast:	n/a	n/a
42	POLR2A	chr11:47205622-47209522	HepG2	liver:	n/a	n/a
43	TBP	chr11:47206776-47207686	H1-hESC	embryonic stem cell:	n/a	n/a
44	SP1	chr11:47206795-47207284	A549	lung:	n/a	chr11:47207016-47207025 chr11:47207137-47207151 chr11:47207010-47207022 chr11:47207110-47207122 chr11:47207015-47207027 chr11:47207012-47207026 chr11:47207111-47207120 chr11:47207110-47207121 chr11:47207011-47207020 chr11:47207015-47207027 chr11:47207168-47207175 chr11:47207007-47207021 chr11:47207107-47207121
45	POLR2A	chr11:47206774-47208685	H1-hESC	embryonic stem cell:	n/a	n/a
46	TAF1	chr11:47206785-47207508	H1-hESC	embryonic stem cell:	n/a	n/a
47	CHD2	chr11:47206786-47208938	Hela-S3	cervix:	n/a	chr11:47207010-47207020 chr11:47207603-47207613
48	FOS	chr11:47206796-47207345	MCF10A-Er-Src	breast:	n/a	chr11:47206924-47206935 chr11:47206925-47206933
49	TEAD4	chr11:47206716-47207385	HepG2	liver:	n/a	n/a
50	SMARCC1	chr11:47206499-47207484	Hela-S3	cervix:	n/a	chr11:47206925-47206934

No.	Distal block	Cell Line	Cell type
1	chr11:47205835..47208468-chr11:47280225..47282817,2	MCF-7	breast:
2	chr11:47205640..47208812-chr11:47225906..47229370,3	MCF-7	breast:
3	chr11:47206745..47208837-chr11:47280102..47282885,2	K562	blood:
4	chr11:47202119..47205492-chr11:47206060..47209673,5	K562	blood:
5	chr11:47204494..47207545-chr11:47289955..47292546,3	K562	blood:
6	chr11:47205635..47209843-chr11:47268961..47271979,7	MCF-7	breast:
7	chr11:47205217..47215436-chr11:47233934..47241095,26	MCF-7	breast:
8	chr11:47203732..47205768-chr11:47206390..47208181,2	MCF-7	breast:
9	chr11:47205613..47207687-chr11:47429461..47432184,2	K562	blood:
10	chr11:47205689..47216568-chr11:47232414..47239487,27	MCF-7	breast:
11	chr11:47205996..47209414-chr11:47263017..47267262,4	MCF-7	breast:
12	chr11:47206281..47210029-chr11:47290997..47292963,3	K562	blood:
13	chr11:47204023..47207155-chr11:47207314..47211225,4	K562	blood:
14	chr11:47203683..47208496-chr11:47223862..47228000,5	MCF-7	breast:
15	chr11:47205341..47210329-chr11:47212095..47213798,5	MCF-7	breast:
16	chr11:47205837..47210171-chr11:47289770..47293955,7	MCF-7	breast:
17	chr11:47205592..47209017-chr11:47278399..47281373,5	MCF-7	breast:

Variant related genes	Relation type
PACSIN3	TF binding region
ENSG00000243802	Chromatin interaction
ENSG00000165912	Chromatin interaction
ENSG00000255197	Chromatin interaction
ENSG00000266540	Chromatin interaction
ENSG00000256746	Chromatin interaction
ENSG00000165915	Chromatin interaction
ENSG00000134575	Chromatin interaction
ENSG00000134574	Chromatin interaction
ENSG00000025434	Chromatin interaction
ENSG00000110514	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv897324	chr11:47193566-47212032	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	esv3375306	chr11:47206601-47209149	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47197000-47207600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
2	chr11:47199600-47207000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:47200000-47207200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:47200400-47207200	Weak transcription	K562	blood
5	chr11:47205600-47207000	Flanking Active TSS	Fetal Intestine Large	intestine
6	chr11:47205600-47207400	Flanking Active TSS	Liver	Liver
7	chr11:47205600-47208200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:47205600-47208200	Active TSS	Left Ventricle	heart
9	chr11:47205800-47208200	Active TSS	Right Ventricle	heart
10	chr11:47206000-47207000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:47206000-47207000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:47206000-47207000	Flanking Active TSS	Brain Hippocampus Middle	brain
13	chr11:47206000-47207000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:47206000-47207400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr11:47206000-47207600	Flanking Active TSS	HMEC	breast
16	chr11:47206000-47208200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:47206000-47209200	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr11:47206000-47210000	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr11:47206200-47207000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:47206200-47207000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr11:47206200-47207000	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:47206200-47207000	Flanking Active TSS	Brain Cingulate Gyrus	brain
23	chr11:47206200-47207000	Flanking Active TSS	Hela-S3	cervix
24	chr11:47206200-47207000	Flanking Active TSS	NH-A	brain
25	chr11:47206200-47207400	Flanking Active TSS	NHLF	lung
26	chr11:47206200-47207600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:47206200-47207600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr11:47206200-47207600	Flanking Active TSS	Pancreas	Pancrea
29	chr11:47206200-47207800	Bivalent/Poised TSS	HepG2	liver
30	chr11:47206200-47208400	Bivalent/Poised TSS	Fetal Brain Female	brain
31	chr11:47206200-47209000	Active TSS	Brain Substantia Nigra	brain
32	chr11:47206200-47209000	Active TSS	Gastric	stomach
33	chr11:47206200-47209400	Active TSS	Psoas Muscle	Psoas
34	chr11:47206400-47207000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr11:47206400-47207000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr11:47206400-47207000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
37	chr11:47206400-47207000	Flanking Active TSS	HSMM	muscle
38	chr11:47206400-47207200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:47206400-47207200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:47206400-47207200	Active TSS	Lung	lung
41	chr11:47206400-47207400	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr11:47206400-47207400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr11:47206400-47207400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:47206400-47207600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:47206400-47207600	Flanking Active TSS	Placenta	Placenta
46	chr11:47206400-47207800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
47	chr11:47206400-47207800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
48	chr11:47206400-47208200	Active TSS	Brain Angular Gyrus	brain
49	chr11:47206400-47208200	Active TSS	Brain Anterior Caudate	brain
50	chr11:47206400-47208200	Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links