Variant report

Variant	rs370287994
Chromosome Location	chr7:105222374-105222375
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr7:105221507-105222414	HCT-116	colon:	n/a	chr7:105221986-105221995 chr7:105221985-105221996 chr7:105221987-105221996 chr7:105221981-105222002 chr7:105221988-105221997 chr7:105221987-105221996 chr7:105221985-105221998
2	MXI1	chr7:105220901-105222488	SK-N-SH	brain:	n/a	chr7:105221986-105221995
3	POLR2A	chr7:105221444-105222472	H1-hESC	embryonic stem cell:	n/a	n/a
4	CEBPB	chr7:105221428-105222427	A549	lung:	n/a	chr7:105222256-105222269 chr7:105222257-105222268 chr7:105222256-105222267
5	CEBPB	chr7:105221969-105222421	HepG2	liver:	n/a	chr7:105222256-105222269 chr7:105222257-105222268 chr7:105222256-105222267
6	CEBPB	chr7:105221985-105222522	A549	lung:	n/a	chr7:105222256-105222269 chr7:105222257-105222268 chr7:105222256-105222267

No.	Distal block	Cell Line	Cell type
1	chr7:105171405..105173628-chr7:105221272..105223628,2	MCF-7	breast:
2	chr7:105159598..105163989-chr7:105219696..105223115,7	MCF-7	breast:
3	chr19:5690148..5691832-chr7:105220231..105223207,2	K562	blood:

Variant related genes	Relation type
EFCAB10	TF binding region
ENSG00000091127	Chromatin interaction
ENSG00000135249	Chromatin interaction
ENSG00000130255	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981568	chr7:105222012-105223485	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105220600-105222400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:105221400-105222400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr7:105221400-105222400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:105221400-105222400	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr7:105221400-105222400	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr7:105221400-105222400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr7:105221400-105222400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr7:105221400-105222400	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr7:105221400-105222400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:105221400-105222400	Active TSS	Brain Angular Gyrus	brain
11	chr7:105221400-105222400	Active TSS	Brain Germinal Matrix	brain
12	chr7:105221600-105222400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:105221600-105222400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:105221600-105222400	Flanking Active TSS	Fetal Brain Male	brain
15	chr7:105221800-105222400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr7:105221800-105222400	Active TSS	HepG2	liver
17	chr7:105222000-105222400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr7:105222000-105222400	Flanking Active TSS	Fetal Brain Female	brain
19	chr7:105222000-105222600	Flanking Active TSS	A549	lung
20	chr7:105222000-105229800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:105222200-105222400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:105222200-105222400	Enhancers	Primary B cells from peripheral blood	blood
23	chr7:105222200-105222400	Enhancers	Primary hematopoietic stem cells	blood
24	chr7:105222200-105222400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:105222200-105222400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:105222200-105222400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:105222200-105222400	Active TSS	Muscle Satellite Cultured Cells	--
28	chr7:105222200-105222400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:105222200-105222400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:105222200-105222400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:105222200-105222400	Active TSS	Brain Hippocampus Middle	brain
32	chr7:105222200-105222400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
33	chr7:105222200-105222400	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
34	chr7:105222200-105222400	Weak transcription	Right Atrium	heart
35	chr7:105222200-105222400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
36	chr7:105222200-105222400	Enhancers	HUVEC	blood vessel
37	chr7:105222200-105222400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
38	chr7:105222200-105222800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:105222200-105229800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:105222200-105253000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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