Variant report

Variant	rs370415
Chromosome Location	chr10:55336841-55336842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11003684	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003685	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11003692	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11003693	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11003695	0.98[EUR][1000 genomes]
rs11003696	0.95[EUR][1000 genomes]
rs11003697	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11003699	0.95[EUR][1000 genomes]
rs11003701	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11003702	0.97[EUR][1000 genomes]
rs11003704	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11003706	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11003714	0.97[EUR][1000 genomes]
rs11003715	0.97[EUR][1000 genomes]
rs11003723	0.93[EUR][1000 genomes]
rs11003725	0.93[EUR][1000 genomes]
rs11003768	0.84[EUR][1000 genomes]
rs11003769	0.84[EUR][1000 genomes]
rs11492404	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12256611	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12355362	0.84[EUR][1000 genomes]
rs12769841	0.96[EUR][1000 genomes]
rs12772474	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12779744	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1489832	0.98[EUR][1000 genomes]
rs16937596	0.98[EUR][1000 genomes]
rs16937607	0.95[EUR][1000 genomes]
rs16937609	0.91[EUR][1000 genomes]
rs17343	0.97[EUR][1000 genomes]
rs17344	0.95[EUR][1000 genomes]
rs17345	0.94[EUR][1000 genomes]
rs17346	0.95[EUR][1000 genomes]
rs17696599	0.94[EUR][1000 genomes]
rs34684767	0.97[EUR][1000 genomes]
rs351853	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35895688	0.98[EUR][1000 genomes]
rs35946044	0.88[EUR][1000 genomes]
rs35957518	0.93[EUR][1000 genomes]
rs36046455	0.80[EUR][1000 genomes]
rs386402	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56282513	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7083485	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7092924	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7093101	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7098115	0.92[EUR][1000 genomes]
rs7098708	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71490970	0.88[EUR][1000 genomes]
rs767605	0.92[EUR][1000 genomes]
rs7898956	0.94[EUR][1000 genomes]
rs7900645	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9733895	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs370415	LGALS12	trans	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55336600-55337800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:55336600-55338000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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