Variant report

Variant	rs371933889
Chromosome Location	chr8:99794546-99794547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1025685	chr8:99706280-99826236	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv539691	chr8:99706280-99826236	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv981968	chr8:99794499-99809509	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99775600-99796200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:99776600-99798600	Weak transcription	Fetal Heart	heart
3	chr8:99776800-99797800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:99778600-99796200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:99779000-99796400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:99779000-99796400	Weak transcription	Aorta	Aorta
7	chr8:99779000-99796400	Weak transcription	Fetal Lung	lung
8	chr8:99779400-99796000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:99779400-99796200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:99785000-99796600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:99785200-99796000	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:99785200-99796200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:99789600-99796000	Weak transcription	Fetal Intestine Small	intestine
14	chr8:99789800-99796200	Weak transcription	Fetal Stomach	stomach
15	chr8:99791600-99795800	Weak transcription	A549	lung
16	chr8:99792000-99796200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:99792600-99794600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr8:99792600-99794800	Enhancers	NHDF-Ad	bronchial
19	chr8:99792800-99795000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:99792800-99796400	Enhancers	Liver	Liver
21	chr8:99793000-99794600	Enhancers	Osteobl	bone
22	chr8:99793000-99794800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr8:99793000-99794800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:99793000-99794800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:99793000-99794800	Enhancers	HMEC	breast
26	chr8:99793000-99796400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:99793200-99794600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:99793200-99794600	Enhancers	NHEK	skin
29	chr8:99793200-99794800	Enhancers	Primary T cells from cord blood	blood
30	chr8:99793200-99794800	Enhancers	Primary hematopoietic stem cells	blood
31	chr8:99793200-99794800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:99793200-99794800	Enhancers	Ovary	ovary
33	chr8:99793200-99794800	Enhancers	Psoas Muscle	Psoas
34	chr8:99793200-99794800	Flanking Active TSS	Dnd41	blood
35	chr8:99793400-99794800	Enhancers	Fetal Thymus	thymus
36	chr8:99793400-99794800	Enhancers	Thymus	Thymus
37	chr8:99793400-99796000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr8:99793400-99796200	Weak transcription	Brain Substantia Nigra	brain
39	chr8:99793600-99794600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:99793600-99795000	Enhancers	Adipose Nuclei	Adipose
41	chr8:99793600-99796200	Weak transcription	Fetal Intestine Large	intestine
42	chr8:99793600-99796200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr8:99793800-99794600	Weak transcription	Small Intestine	intestine
44	chr8:99793800-99794800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:99793800-99794800	Enhancers	HUVEC	blood vessel
46	chr8:99793800-99796200	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:99793800-99796600	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:99794000-99794600	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr8:99794000-99795600	Weak transcription	GM12878-XiMat	blood
50	chr8:99794000-99796400	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links