Variant report

Variant	rs372213781
Chromosome Location	chr3:120066644-120066645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr3:120066551-120069108	SK-N-SH	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:119962878..119965844-chr3:120065668..120069448,4	MCF-7	breast:
2	chr3:120055756..120058586-chr3:120065980..120068170,2	K562	blood:
3	chr3:119813314..119815193-chr3:120066557..120069483,2	MCF-7	breast:
4	chr3:120066130..120068617-chr3:120117930..120119437,2	K562	blood:
5	chr3:120066467..120068992-chr3:120105411..120108399,2	MCF-7	breast:
6	chr3:120002820..120005702-chr3:120066388..120068289,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000240661	TF binding region
ENSG00000242613	Chromatin interaction
ENSG00000175697	Chromatin interaction
ENSG00000163430	Chromatin interaction
ENSG00000242622	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv877376	chr3:119824037-120119446	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv829698	chr3:119960869-120129126	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv1012127	chr3:120015620-120272893	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv536707	chr3:120015620-120272893	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	nsv1006428	chr3:120015620-120421982	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv236293	chr3:120066250-120069861	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
12	esv3369381	chr3:120066425-120425510	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	esv3350409	chr3:120066445-120425480	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
14	nsv3968	chr3:120066454-120111463	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120026800-120067200	Weak transcription	Aorta	Aorta
2	chr3:120033200-120067000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:120044400-120066800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:120045200-120066800	Weak transcription	Stomach Mucosa	stomach
5	chr3:120045600-120066800	Weak transcription	Colonic Mucosa	Colon
6	chr3:120048400-120066800	Weak transcription	Right Ventricle	heart
7	chr3:120051000-120067000	Weak transcription	Esophagus	oesophagus
8	chr3:120051200-120066800	Weak transcription	Psoas Muscle	Psoas
9	chr3:120051200-120066800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:120052600-120067000	Weak transcription	Left Ventricle	heart
11	chr3:120057800-120067000	Weak transcription	Small Intestine	intestine
12	chr3:120059000-120066800	Weak transcription	Placenta	Placenta
13	chr3:120061400-120066800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:120061400-120066800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:120061400-120066800	Weak transcription	Gastric	stomach
16	chr3:120061400-120067000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:120061600-120066800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:120061600-120067000	Weak transcription	Spleen	Spleen
19	chr3:120061800-120066800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr3:120062000-120066800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:120062000-120066800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:120062400-120066800	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr3:120062600-120066800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:120062600-120066800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr3:120062600-120066800	Weak transcription	HSMM	muscle
26	chr3:120063000-120067000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr3:120063400-120066800	Weak transcription	HSMMtube	muscle
28	chr3:120063800-120066800	Enhancers	Brain Hippocampus Middle	brain
29	chr3:120064800-120067000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:120065000-120066800	Enhancers	Brain Cingulate Gyrus	brain
31	chr3:120065200-120066800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr3:120065200-120066800	Enhancers	Adipose Nuclei	Adipose
33	chr3:120065200-120067000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:120065200-120067000	Weak transcription	Lung	lung
35	chr3:120065200-120067200	Transcr. at gene 5' and 3'	Dnd41	blood
36	chr3:120065600-120066800	Enhancers	Brain Angular Gyrus	brain
37	chr3:120065800-120066800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr3:120065800-120067000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr3:120066000-120066800	Weak transcription	Brain Substantia Nigra	brain
40	chr3:120066000-120066800	Enhancers	Fetal Brain Male	brain
41	chr3:120066000-120066800	Enhancers	Fetal Heart	heart
42	chr3:120066000-120066800	Enhancers	Fetal Intestine Large	intestine
43	chr3:120066000-120066800	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr3:120066200-120066800	Weak transcription	Fetal Muscle Leg	muscle
45	chr3:120066200-120066800	Enhancers	Fetal Thymus	thymus
46	chr3:120066200-120067000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:120066400-120066800	Enhancers	Primary T cells fromperipheralblood	blood
48	chr3:120066400-120066800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:120066400-120066800	Enhancers	Colon Smooth Muscle	Colon
50	chr3:120066400-120067000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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