Variant report

Variant	rs372434777
Chromosome Location	chr11:56609091-56609092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:56604071..56605908-chr11:56606591..56609227,2	K562	blood:
2	chr11:56608383..56609306-chr11:57016176..57017128,2	MCF-7	breast:
3	chr11:56608400..56609354-chr11:57016455..57017401,5	MCF-7	breast:
4	chr11:56608365..56609372-chr11:57017133..57018075,3	MCF-7	breast:
5	chr11:56608476..56609545-chr11:57016926..57017835,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56608800-56609200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:56608800-56609200	Enhancers	Liver	Liver
3	chr11:56608800-56609200	Enhancers	Fetal Kidney	kidney
4	chr11:56608800-56610200	Enhancers	HMEC	breast
5	chr11:56609000-56609200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:56609000-56609200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:56609000-56609200	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
8	chr11:56609000-56609200	Flanking Active TSS	Brain Hippocampus Middle	brain
9	chr11:56609000-56609200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:56609000-56609200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr11:56609000-56609200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr11:56609000-56609400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:56609000-56609400	Enhancers	Fetal Brain Male	brain
14	chr11:56609000-56609400	Flanking Active TSS	A549	lung
15	chr11:56609000-56609400	Enhancers	NHEK	skin
16	chr11:56609000-56609800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:56609000-56609800	Enhancers	Fetal Intestine Large	intestine
18	chr11:56609000-56610800	Enhancers	Fetal Lung	lung
19	chr11:56609000-56611000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:56609000-56611600	Enhancers	Stomach Mucosa	stomach

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